Detail information of GWHGAAEX016026/evm.TU.scaffold_72.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159899383|ref|YP_001545630.1| | 8.00E-50 | sulfite oxidase [Herpetosiphon aurantiacus DSM 785] |
| KOG | KOG0535 | 0 | Sulfite oxidase, molybdopterin-binding component |
| nr | gi|743802739|ref|XP_010926705.1| | 0 | PREDICTED: sulfite oxidase [Elaeis guineensis] |
| Swissprot | tr|Q9S850|SUOX_ARATH | 0 | Sulfite oxidase |
| trEMBL | tr|J3MUP4|J3MUP4_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB08G28250.1} |
| TAIR | AT3G01910 | 0 | sulfite oxidase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 2300437 | 2317292 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016026
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00174.18 | Oxidored_molyb | 53 | 235 | 9.70E-58 |
| PF03404.15 | Mo-co_dimer | 259 | 389 | 4.90E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00387 | SUOX | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Sulfur metabolism | map00920 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042128 | Biological Process | nitrate assimilation |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0030151 | Molecular Function | molybdenum ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.580 |
| SRR2545915 | Juvenile tuber | 23.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.310 |
| SRR5643514 | five period of Gastrodia elata | 26.710 | |
| SRR5643515 | five period of Gastrodia elata | 21.940 | |
| SRR5643524 | five period of Gastrodia elata | 27.290 | |
| SRR5643525 | five period of Gastrodia elata | 12.580 | |
| SRR5643528 | five period of Gastrodia elata | 13.330 | |
| SRR5643658 | five period of Gastrodia elata | 11.180 | |
| SRR5643659 | five period of Gastrodia elata | 19.330 | |
| SRR5643660 | five period of Gastrodia elata | 22.180 | |
| SRR5643661 | five period of Gastrodia elata | 23.970 | |
| SRR5643662 | five period of Gastrodia elata | 23.490 | |
| SRR5643663 | five period of Gastrodia elata | 21.730 | |
| SRR5643664 | five period of Gastrodia elata | 21.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.50 |
| Juven | Juvenile tuber | 19.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.00 | |
| Mother_Juven | Mother tuber of Juvenile | 15.82 |