Detail information of GWHGAAEX016029/evm.TU.scaffold_72.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|147921592|ref|YP_684591.1| | 4.00E-51 | putative serine/threonine protein kinase [Methanocella arvoryzae MRE50] |
| KOG | KOG2270 | 0 | Serine/threonine protein kinase involved in cell cycle control |
| nr | gi|743802702|ref|XP_010926693.1| | 0 | PREDICTED: serine/threonine-protein kinase RIO1-like isoform X1 [Elaeis guineensis] |
| trEMBL | tr|B8B7P2|B8B7P2_ORYSI | 0 | Serine/threonine-protein kinase RIO1 {ECO:0000256|PIRNR:PIRNR038147} |
| TAIR | AT5G37350_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 2327454 | 2356730 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016029
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01163.21 | RIO1 | 170 | 357 | 1.20E-74 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07178 | RIOK1 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.990 |
| SRR2545915 | Juvenile tuber | 20.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.340 |
| SRR5643514 | five period of Gastrodia elata | 17.670 | |
| SRR5643515 | five period of Gastrodia elata | 16.090 | |
| SRR5643524 | five period of Gastrodia elata | 15.880 | |
| SRR5643525 | five period of Gastrodia elata | 13.570 | |
| SRR5643528 | five period of Gastrodia elata | 11.500 | |
| SRR5643658 | five period of Gastrodia elata | 13.730 | |
| SRR5643659 | five period of Gastrodia elata | 21.540 | |
| SRR5643660 | five period of Gastrodia elata | 25.270 | |
| SRR5643661 | five period of Gastrodia elata | 23.670 | |
| SRR5643662 | five period of Gastrodia elata | 21.700 | |
| SRR5643663 | five period of Gastrodia elata | 24.440 | |
| SRR5643664 | five period of Gastrodia elata | 24.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.97 |
| Juven | Juvenile tuber | 26.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.51 | |
| Mother_Juven | Mother tuber of Juvenile | 16.94 |