Detail information of GWHGAAEX016034/evm.TU.scaffold_72.68
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|385805337|ref|YP_005841735.1| | 8.00E-14 | inosine-5'-monophosphate dehydrogenase-like protein V [Fervidicoccus fontis Kam940] |
| nr | gi|672172638|ref|XP_008806419.1| | 0 | PREDICTED: CBS domain-containing protein CBSCBSPB1-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|P0DH79|Y5064_ARATH | 0 | CBS domain-containing protein CBSCBSPB5 |
| trEMBL | tr|M0TJY4|M0TJY4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P22980_001} |
| TAIR | AT5G50640 | 0 | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 2598552 | 2643261 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016034
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00571.27 | CBS | 61 | 114 | 9.00E-07 |
| PF00571.27 | CBS | 127 | 170 | 1.90E-05 |
| PF00571.27 | CBS | 239 | 282 | 0.0023 |
| PF00571.27 | CBS | 297 | 349 | 0.0037 |
| PF00564.23 | PB1 | 417 | 500 | 6.80E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.160 |
| SRR2545915 | Juvenile tuber | 5.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.010 |
| SRR5643514 | five period of Gastrodia elata | 11.080 | |
| SRR5643515 | five period of Gastrodia elata | 9.240 | |
| SRR5643524 | five period of Gastrodia elata | 9.390 | |
| SRR5643525 | five period of Gastrodia elata | 12.080 | |
| SRR5643528 | five period of Gastrodia elata | 12.410 | |
| SRR5643658 | five period of Gastrodia elata | 14.870 | |
| SRR5643659 | five period of Gastrodia elata | 5.220 | |
| SRR5643660 | five period of Gastrodia elata | 7.360 | |
| SRR5643661 | five period of Gastrodia elata | 6.220 | |
| SRR5643662 | five period of Gastrodia elata | 5.270 | |
| SRR5643663 | five period of Gastrodia elata | 7.040 | |
| SRR5643664 | five period of Gastrodia elata | 7.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.98 |
| Juven | Juvenile tuber | 10.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.38 | |
| Mother_Juven | Mother tuber of Juvenile | 9.32 |