Detail information of GWHGAAEX016039/evm.TU.scaffold_72.75


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428225072|ref|YP_007109169.1|0glutamate-1-semialdehyde 2,1-aminomutase [Geitlerinema sp. PCC 7407]
KOGKOG14010Acetylornithine aminotransferase
nrgi|695032456|ref|XP_009403776.1|0PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q6YZE2|GSA_ORYSJ0Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic (Precursor)
trEMBLtr|M0T543|M0T543_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P07940_001}
TAIRAT3G487300glutamate-1-semialdehyde 2,1-aminomutase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007128754092883291-
Transcript Sequence

Network for GWHGAAEX016039

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00202.20Aminotran_3814411.30E-70
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01845hemL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0033014Biological Processtetrapyrrole biosynthetic process
GO:0008483Molecular Functiontransaminase activity
GO:0003824Molecular Functioncatalytic activity
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0042286Molecular Functionglutamate-1-semialdehyde 2,1-aminomutase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.010
SRR2545915Juvenile tuber27.350
SRP108465SRR5643513five period of Gastrodia elata59.070
SRR5643514five period of Gastrodia elata42.450
SRR5643515five period of Gastrodia elata51.560
SRR5643524five period of Gastrodia elata44.720
SRR5643525five period of Gastrodia elata50.990
SRR5643528five period of Gastrodia elata47.950
SRR5643658five period of Gastrodia elata42.780
SRR5643659five period of Gastrodia elata69.880
SRR5643660five period of Gastrodia elata79.620
SRR5643661five period of Gastrodia elata78.610
SRR5643662five period of Gastrodia elata110.670
SRR5643663five period of Gastrodia elata101.260
SRR5643664five period of Gastrodia elata108.900
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_153.940
SRR6049655Rhizomagastrodiae_C368-T10_good_125.290
SRR6049656Rhizomagastrodiae_C368-T07_good_148.130
SRR6049657Rhizomagastrodiae_C368-T07_good_151.340
SRR6049658Rhizomagastrodiae_C368-T04_good_143.360
SRR6049659Rhizomagastrodiae_C368-T04_good_143.440
SRR6049660Rhizomagastrodiae_C368-T01_good_140.520
SRR6049661Rhizomagastrodiae_C368-T04_good_145.130
SRR6049662Rhizomagastrodiae_C368-T01_good_150.570
SRR6049663Rhizomagastrodiae_C368-T01_good_137.060
SRR6049664Rhizomagastrodiae_C368-T10_good_140.290
SRR6049665Rhizomagastrodiae_C368-T10_good_140.290
SRP279888GastroGastrodia elata tuber 68.77
JuvenJuvenile tuber51.04
Mother_GastroMother tuber of Gastrodia elata 50.58
Mother_JuvenMother tuber of Juvenile 39.98