Detail information of GWHGAAEX016043/evm.TU.scaffold_72.78


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|85858554|ref|YP_460756.1|5.00E-3450S ribosomal protein L27 [Syntrophus aciditrophicus SB]
KOGKOG46001.00E-71Mitochondrial ribosomal protein MRP7 (L2)
nrgi|672163635|ref|XP_008801675.1|1.16E-85PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L27, chloroplastic [Phoenix dactylifera]
Swissprottr|Q9FLN4|RK27_ARATH4.00E-7250S ribosomal protein L27, chloroplastic (Precursor)
trEMBLtr|A0A022RZD3|A0A022RZD3_ERYGU4.00E-85Uncharacterized protein {ECO:0000313|EMBL:EYU45414.1}
TAIRAT5G409501.00E-71ribosomal protein large subunit 27

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007129952773009197-
Transcript Sequence

Network for GWHGAAEX016043

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01016.18Ribosomal_L27531321.20E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02899RP-L27, MRPL27, rpmA Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms53.210
SRR2545915Juvenile tuber49.540
SRP108465SRR5643513five period of Gastrodia elata25.680
SRR5643514five period of Gastrodia elata24.940
SRR5643515five period of Gastrodia elata20.560
SRR5643524five period of Gastrodia elata24.670
SRR5643525five period of Gastrodia elata22.120
SRR5643528five period of Gastrodia elata22.800
SRR5643658five period of Gastrodia elata19.860
SRR5643659five period of Gastrodia elata37.820
SRR5643660five period of Gastrodia elata37.180
SRR5643661five period of Gastrodia elata39.520
SRR5643662five period of Gastrodia elata41.060
SRR5643663five period of Gastrodia elata38.840
SRR5643664five period of Gastrodia elata40.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.360
SRR6049655Rhizomagastrodiae_C368-T10_good_136.850
SRR6049656Rhizomagastrodiae_C368-T07_good_135.160
SRR6049657Rhizomagastrodiae_C368-T07_good_150.390
SRR6049658Rhizomagastrodiae_C368-T04_good_148.300
SRR6049659Rhizomagastrodiae_C368-T04_good_149.080
SRR6049660Rhizomagastrodiae_C368-T01_good_139.380
SRR6049661Rhizomagastrodiae_C368-T04_good_140.440
SRR6049662Rhizomagastrodiae_C368-T01_good_133.150
SRR6049663Rhizomagastrodiae_C368-T01_good_135.880
SRR6049664Rhizomagastrodiae_C368-T10_good_134.200
SRR6049665Rhizomagastrodiae_C368-T10_good_134.200
SRP279888GastroGastrodia elata tuber 64.69
JuvenJuvenile tuber61.83
Mother_GastroMother tuber of Gastrodia elata 20.11
Mother_JuvenMother tuber of Juvenile 35.07