Gene detail

Detail information of GWHGAAEX016044/evm.TU.scaffold_72.79

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672163629\|ref\|XP_008801671.1\|	0	PREDICTED: F-box only protein 6-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9FZK1\|FBX6_ARATH	8.00E-178	F-box only protein 6
trEMBL	tr\|F6HGB2\|F6HGB2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51305.1}
TAIR	AT1G27340	3.00E-177	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000071	3039918	3077581	+

Transcript Sequence
>GWHTAAEX016044 AGAAAATTTCAGCATCTTAATCCCGATCGTTGAAATGGGAAAGAAAATTATGGCGAACCGGACCTGAATCCCAGTGGTAGAATTCAGTAAATAGCGCTCCCATTTGGGGTTTAATGTAAGAGAGTTGAGATATAGAGGACGACAGGGGCGGAGCTCGTCGGTGGGAGATGGAGAGGGCGGCGGTGCTCCGGCAGCTCGTCGGCGAAATCATTGAGTTTCACGATTTCTTCGAGCGAAGGTGGTGCTCATTTGATTTTGATGGTAGTTCAATCGAAGATGATTATTGTGGTTTGGTATTAGAGGATAAATCTAAAATAGTTAATATGTTGGAAGAAAAGGTGAGTCCAAACAAAAGATCACGGAGTGAAAAGAGCAGCAGAATATTGTTTACCATTCCCAATTTAATAGGTACCATGGAACAAGAAATTTGGAAGGAACTCCCTGAAGATCTTTATGAAGCTGTGATTGCAAGACTTCCAATAGCAACTTTCTTTCGTTTCCGCTCAGTATGTCGGAAGTGGAATTCCTTGCTTTCCTCTAGTAGCTTCTCACGGCACTTTGCTGAAGTTAAGCAAATTCATCCTTGGTTTTATATTGTTGTTCATGACAGGGTTTATGGCTTTAGTACTGTTAATGGTGGTGCAATGTATGACCCATCTTTAAAAAAGTGGCACCACCCATCTATACCTGCTCTTCGTTCTAAGATCTTTCTAACTGTGGCTTCAGCTGGCGGTCTTGTTTGTCTCTTGGATATAAACAACAGACACTTTTATGTTTGCAATCCTCTCATCAAGGCAGTCAAAGAACTTCCACCAAGGTCTACTCGTGTGCGTTCACGTGTTGCTGTAGGGATGGTTTTGACCGGGAATGCATCCATCCACGGATACAAAGTAGTTTGGCTGGGATGCAATGGAGATTATGAGATCTATGATTCTGTGCAGAACACATGGTCTCGAGAGGGGTCTTTACCTCAAAGCGTCAAGCTTCCACTCTCCTTGAATTTCAGGTCACAGGCAGTGTGCATCGGTAGCACACTCTATTTTGTTCGAGGTAACCCTGATGGTATATTGACATATGATGCCACCACAGGCATTTGGAAACAATTAGTTATCCCATTACCGCTGCATATAACAGATCATACAATTGCAGAGTGTGGGGGCAAGGTTATGCTTGTCGGTTTGCTCTCCAAAAATGCAGCGACTTGTGTTTGCATATGGGAGCTGCAGAAGATGACTCTCTTATGGAAGGAGGTTGACAGAATGCCAAACATCTCGTGCTTAGAGTATTATGGAAAGCACGTAAAGATGACTTGCATGGGAAATCAGGGGATCCTCATGCTGTCCTTAAGATCAACAAGGACTAGTCGTTTCATTACATATGATTTGTGCAAAAAGAAATGGCAAAAGGTTCCGGACTGTACACTTCCCCTCAATGGGAGGAAGCAGTGGATAGCATGTGGCACAGCATTCTATCCTTGTCCAACTGCTTTTCCTTGATTACATTCTTTCGTTGAACACAAGGCTTGGGCTCCTCACATCACGACTGCTCTGCTGATAAGCAGTGTTAGATTTTTGTTTTCTCCTGCATGGTGCAAGTTGGGATTTATAAACTTGGCGACCAATGCTCATACTTAAAAATTTTAATCACGCCCCTTTTTTTGCCTTAATTTCATGATGCCATTCTGCTTTCTTGAATATTAGTGTTAAACTGTTAATAGTTGAGACGTGTTATATAATGTGAAAATTTATAATAATTAAGGAGATTAAATATAAATAAATTATGGGATTAGTGATTTATAGATTTACTAAATTTAGATGGAATTCCTGCGATGTGGTTTGCTGTGAGAGCCTTATGCTAACCATCCTGAAGAAAAGCTCACCCTGAGCAAAGATAAATTTTATAAAGCAGTTATATGACCGAATGCGGGGCCAACAGAGAAGATATTTGCCAATATAACAAGTGTTCGAAAGATGAAAATGGTACGGTGGATGAAGATAAAAGGTATTGGAAAAAGCCTTTCAGGAAGAGGTTTTAGCTTAAAAATGATTCATGCAACTTTACCTCATGGGATTAAGTCTCGGTGTTGCTATATGCTAACATATATTTCATAGATAAAGCTATTTGACTTGTATTGTAATGATGTCTCAAAATCAACAATAGCCTCTTTAGAGAATACTCTAATGCAATTAAATGGTGTTAGAATGATTATTGCAACTGCAAATTTTATAGATGTTCTTAAATTTCTTACTATCCA

Network for GWHGAAEX016044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	88	130	8.00E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.350
SRP064423	SRR2545915	Juvenile tuber	30.820
SRP108465	SRR5643513	five period of Gastrodia elata	24.300
	SRR5643514	five period of Gastrodia elata	33.620
	SRR5643515	five period of Gastrodia elata	28.020
	SRR5643524	five period of Gastrodia elata	31.050
	SRR5643525	five period of Gastrodia elata	32.480
	SRR5643528	five period of Gastrodia elata	29.400
	SRR5643658	five period of Gastrodia elata	31.670
	SRR5643659	five period of Gastrodia elata	33.060
	SRR5643660	five period of Gastrodia elata	37.200
	SRR5643661	five period of Gastrodia elata	37.010
	SRR5643662	five period of Gastrodia elata	35.240
	SRR5643663	five period of Gastrodia elata	37.560
	SRR5643664	five period of Gastrodia elata	36.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.760
SRP279888	Gastro	Gastrodia elata tuber	34.55
	Juven	Juvenile tuber	32.43
	Mother_Gastro	Mother tuber of Gastrodia elata	24.85
	Mother_Juven	Mother tuber of Juvenile	38.98