Detail information of GWHGAAEX016045/evm.TU.scaffold_72.80


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307354786|ref|YP_003895837.1|3.00E-11small nuclear riboprotein-like protein [Methanoplanus petrolearius DSM 11571]
KOGKOG17831.00E-48Small nuclear ribonucleoprotein F
nrgi|212722680|ref|NP_001131392.1|8.54E-54Small nuclear ribonucleoprotein F [Zea mays]
Swissprottr|O22823|LSM6B_ARATH4.00E-49Sm-like protein LSM36B {ECO:0000305}
trEMBLtr|B4FCE3|B4FCE3_MAIZE3.00E-54Uncharacterized protein {ECO:0000313|EMBL:ACF79786.1, ECO:0000313|EnsemblPlants:GRMZM2G159675_P02}
TAIRAT2G438101.00E-48Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007130806013108515+
Transcript Sequence

Network for GWHGAAEX016045

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.21LSM20841.60E-18
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12625LSM6 Spliceosome map03040
RNA degradationmap03018

Gene Ontology

GO term OntologyName
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0005732Cellular Componentsmall nucleolar ribonucleoprotein complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms60.560
SRR2545915Juvenile tuber63.280
SRP108465SRR5643513five period of Gastrodia elata111.920
SRR5643514five period of Gastrodia elata126.220
SRR5643515five period of Gastrodia elata110.730
SRR5643524five period of Gastrodia elata114.320
SRR5643525five period of Gastrodia elata75.930
SRR5643528five period of Gastrodia elata64.190
SRR5643658five period of Gastrodia elata56.820
SRR5643659five period of Gastrodia elata110.640
SRR5643660five period of Gastrodia elata124.810
SRR5643661five period of Gastrodia elata127.290
SRR5643662five period of Gastrodia elata101.980
SRR5643663five period of Gastrodia elata110.960
SRR5643664five period of Gastrodia elata100.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_191.830
SRR6049655Rhizomagastrodiae_C368-T10_good_152.070
SRR6049656Rhizomagastrodiae_C368-T07_good_1109.330
SRR6049657Rhizomagastrodiae_C368-T07_good_174.220
SRR6049658Rhizomagastrodiae_C368-T04_good_189.410
SRR6049659Rhizomagastrodiae_C368-T04_good_172.620
SRR6049660Rhizomagastrodiae_C368-T01_good_192.200
SRR6049661Rhizomagastrodiae_C368-T04_good_182.050
SRR6049662Rhizomagastrodiae_C368-T01_good_1113.730
SRR6049663Rhizomagastrodiae_C368-T01_good_1111.150
SRR6049664Rhizomagastrodiae_C368-T10_good_1107.640
SRR6049665Rhizomagastrodiae_C368-T10_good_1107.640
SRP279888GastroGastrodia elata tuber 126.22
JuvenJuvenile tuber112.58
Mother_GastroMother tuber of Gastrodia elata 68.53
Mother_JuvenMother tuber of Juvenile 56.72