Gene detail

Detail information of GWHGAAEX016053/evm.TU.scaffold_72.88

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743863200\|ref\|XP_010943739.1\|	0	PREDICTED: uncharacterized protein At2g33490-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|O22799\|Y2349_ARATH	1.00E-150	Uncharacterized protein At2g33490
trEMBL	tr\|M0TLG2\|M0TLG2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P00600_001}
TAIR	AT3G26910	3.00E-104	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000071	3260456	3281549	-

Transcript Sequence
>GWHTAAEX016053 CAAATTTATCTATCTTTGACCCAAAATAGAACGACTAATGACTAATTAAAGAAGAAACAAAAGAGTGAGCGAGAGAAACGTGAGAGCTCCTTCATCGACATGATTCCTTCTTTGGATTCTTGATCCTTACACGGTTTTGCTGCGCGGAGATTTTCCTGAAACCCTTTGCTTTCTCCCTTTGTTTTCTCTTGCTGGCCAGGCTTCTTTTTCCTTTCTTCATTGGATCACATAACTCCGAATTTGTGAACTCATAATCCGTTCATCAGTTTCTCTGCTTTCTTCATTCATTTCTTCTAGCTTGGGAGTGGAAAACGATGAAGACTTCTCTTAGGAAGCTGAGAGGATTCGCCTCCCTTCACAAGAACGCCGATCTCAGGGAGAAGAGGGACCATAAAATCCCTGCCCGCCAAGACGAGCTCCTTCAGGCATCCCAGGATGTGCTAGAAATGAGGAGCTGCTATGATAGCTTGCTTTCTGCCGCCGCTGCCACAGCAAATAGTGCATATGAATTTTCTGAAGCACTGAAAGAGATGGGCACTTGCCTTCTTGAAAAAACGTCTTTAAATGATGATGAAGAAAGTAGTAGGGTTTTGTTGAACCTGGGGAAAGCACAGTTTGAGCTCCAAAAACTTGTTGATAGTTATCGTGTCCACATTATTCAGACAATTACAACTCCATCAGAATCTCTTTTTAAAGAACTTCAAACCGTAGAGGAGATGAAACGTCAGTGTGATGACAAAAGAGATATATATAAATTTATTTTAGCGACACAGAGAGAAAAAGGACGGGCAAGGCATGGAAAAGGAGAAAGTTATGCTTTGCAGCAGTTGCAGGTAGCCCGAGATGATTATGAGGAGGAGACAAATCTTTTCATCTTTAGGTTGAAATCGTTAAAGCAGGGGCAGTCTCGCAGTCTTTTAACACAGGCCAGTCGACATCATGCTGCTCAGTTAAATTTTTTTAGGAAGGGAGTAAAAGCTCTTGAGATGGTTGAACCGGATGTTAAAGTTGTTGCTGAGCAACAACATATTGATTATGATTTTATTGGACTTGAGGATGATGACACGGAGGATGATGAATATAATGGTTATGGTTCTGATGCAAATGATGATGGTGAGTTGAGCTTTGACTATGGTCACAGTGAACATATTCAAGATGCTGGTTTAACGCATAGACAATCAATGGAGTTAGACCAAGACTATCTGACTGAAACTTCTGCCACCACTGGTATACAGTTAGTGTCAGATAAAAGCCATGGTGATTTTCCCTCTTTTGGTAGAGCGCCTATGACTGGCAGCCAATCTGCGCCGATCTTACCTGAGATGAAACCTGTGCTATCTGAAAGAATCAAACAAATGAGTGCTTCTCCTCCCACGAGATTTCATTCTTATGTCCTACCTACACCCGCAGATGCTCGAAATTCATTCTTTGCAGCTAGTAGGCCAGACAACAAAGCCGAGTGGCCTAAACAGTTATGGCATTCTTCCCCATTGGAGCCGAATAAACCTGCAGAAGCTTTAAAAGTTGAGCAATCAAGCCCCATTACCTTAAATATTTCTCGCCCGGCGCTCAGAGAGAGCGGCACCAAGAGCAGTCAAACTCAACTGCACCCTCCAGCTGAGGGGATGCTATTTTCGCAGTCAATTTTTCATAGTGGAGCGTCTGATAACAAAAAGATTAAGCGACAAGCTTTCTCTGGTCCCCTGACAGGAAAATCTTGGTCAAACAGTCCCAAATTATCCACAAATGAGAATATTCAGCCGGCAGAAAATAATCTGGGTCCTTTCTCCGCAGGGCGTGCTCCATCACCTCAGTTATCCATGTCGCCAAGGCTGATCCCCTCAGTCTCCTCTTTTCCCATGCTGCCTTCAAAAATCAATGAACTTCATGAGCTTCCGAGGCCTCCAATGATCTCGAGGAAACCAGTTATGTCTTCTAGTTTGGTCGGCTATTCCGGCCCATTGTTGCCAAAGAGCGGGCCTTATGCAGATAGTGCAATGTTATCAAATGCAGCGTCGCCCCTACCAACGCCGCCTCAAGCCATAGCTCGCAGTTTTTCTATACCCTCCAGTGCTCAAAGATCTGATACCATGACCGATTTTCTCGAAGCCTCTCATAATGCTGATGCCCACAAGGAAATTTCTTCTCCGCCGCTCGCACTGATCTCTCTCTCAAGCAGCCAACCAAGTAAAAGATTGGCATCGATTTCTTCGGGTGGTATCAAGACAAAAGGGAGCCTGTGATTGAATTCAAGCTTGGGTCAAACAAAGCATGAGAATCTCCGGGCAGCTGCTAAACCGGGGTTTGTGTAAATAGTATTCTGTCCATATTCTTAAGTCTCTTCCCAAATCATTCGTTTGTTGCTGCCAATATCCTCCATTGTACCTCCCAAAACTAGGAAATTACATATCGAACTCCCGCCCGAACATATGGATGCTTCAAGGATTATATCATCTGTGACATGAACGGCGTCCAATCCTTGTGTGTAAAAAAAGGTTGGGTGTTAAATATGTAAGCAGGGAAGGGGGCTTTCTTGTTGTTGATGTTCTCCCTGCCTTCCCATTCATCACATCTCTTAAATGAAGATCTTTGCTTTTGCCGCATTTTTCACCACTCTGCATTCCAGCTTTTAAACTTCGATAATAAAGCAAAACTATTATGATGGCTCGAAAACCGAGGATGGGATATTCATTCAACACCCAAATTTACTACAATTCTCTTTAAAATTTTGTGCTGAATTTGTAATATTCAAGATCGGCTCTTATGCATGTAAATTCCTTTAATTTATT

Network for GWHGAAEX016053

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	68.280
SRP064423	SRR2545915	Juvenile tuber	40.150
SRP108465	SRR5643513	five period of Gastrodia elata	41.440
	SRR5643514	five period of Gastrodia elata	31.560
	SRR5643515	five period of Gastrodia elata	48.750
	SRR5643524	five period of Gastrodia elata	36.940
	SRR5643525	five period of Gastrodia elata	49.750
	SRR5643528	five period of Gastrodia elata	73.980
	SRR5643658	five period of Gastrodia elata	56.010
	SRR5643659	five period of Gastrodia elata	24.870
	SRR5643660	five period of Gastrodia elata	25.970
	SRR5643661	five period of Gastrodia elata	31.460
	SRR5643662	five period of Gastrodia elata	25.790
	SRR5643663	five period of Gastrodia elata	27.460
	SRR5643664	five period of Gastrodia elata	35.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.120
SRP279888	Gastro	Gastrodia elata tuber	14.98
	Juven	Juvenile tuber	21.90
	Mother_Gastro	Mother tuber of Gastrodia elata	101.01
	Mother_Juven	Mother tuber of Juvenile	132.81