Detail information of GWHGAAEX016054/evm.TU.scaffold_72.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|83311416|ref|YP_421680.1|2.00E-166pyruvate dehydrogenase subunit beta [Magnetospirillum magneticum AMB-1]
KOGKOG05240Pyruvate dehydrogenase E1, beta subunit
nrgi|695029484|ref|XP_009402167.1|0PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Musa acuminata subsp. malaccensis]
Swissprottr|Q6Z1G7|ODPB1_ORYSJ0Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial (Precursor)
trEMBLtr|M0T1H5|M0T1H5_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P25000_001}
TAIRAT5G508500Transketolase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007132963543311894-
Transcript Sequence

Network for GWHGAAEX016054

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02779.23Transket_pyr392143.60E-46
PF02780.19Transketolase_C2333551.00E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00162PDHB, pdhB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms132.100
SRR2545915Juvenile tuber125.250
SRP108465SRR5643513five period of Gastrodia elata125.940
SRR5643514five period of Gastrodia elata166.480
SRR5643515five period of Gastrodia elata124.970
SRR5643524five period of Gastrodia elata152.830
SRR5643525five period of Gastrodia elata163.990
SRR5643528five period of Gastrodia elata217.490
SRR5643658five period of Gastrodia elata141.000
SRR5643659five period of Gastrodia elata129.220
SRR5643660five period of Gastrodia elata149.220
SRR5643661five period of Gastrodia elata127.390
SRR5643662five period of Gastrodia elata105.660
SRR5643663five period of Gastrodia elata132.580
SRR5643664five period of Gastrodia elata124.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1161.320
SRR6049655Rhizomagastrodiae_C368-T10_good_1170.120
SRR6049656Rhizomagastrodiae_C368-T07_good_1179.770
SRR6049657Rhizomagastrodiae_C368-T07_good_1156.600
SRR6049658Rhizomagastrodiae_C368-T04_good_1182.100
SRR6049659Rhizomagastrodiae_C368-T04_good_1177.430
SRR6049660Rhizomagastrodiae_C368-T01_good_1173.360
SRR6049661Rhizomagastrodiae_C368-T04_good_1163.360
SRR6049662Rhizomagastrodiae_C368-T01_good_1201.800
SRR6049663Rhizomagastrodiae_C368-T01_good_1185.040
SRR6049664Rhizomagastrodiae_C368-T10_good_1238.820
SRR6049665Rhizomagastrodiae_C368-T10_good_1238.820
SRP279888GastroGastrodia elata tuber 182.31
JuvenJuvenile tuber146.75
Mother_GastroMother tuber of Gastrodia elata 124.64
Mother_JuvenMother tuber of Juvenile 136.01