Detail information of GWHGAAEX016058/evm.TU.scaffold_72.93
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336171450|ref|YP_004578588.1| | 1.00E-29 | multicopper oxidase type 3 [Lacinutrix sp. 5H-3-7-4] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|743839630|ref|XP_010937050.1| | 0 | PREDICTED: putative laccase-9 [Elaeis guineensis] |
| Swissprot | tr|Q6Z8L2|LAC9_ORYSJ | 0 | Putative laccase-9 (Precursor) |
| trEMBL | tr|F6HWA2|F6HWA2_VITVI | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
| TAIR | AT5G09360 | 0 | laccase 14 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 3383478 | 3387068 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016058
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 31 | 144 | 1.30E-41 |
| PF00394.21 | Cu-oxidase | 158 | 306 | 3.40E-37 |
| PF07731.13 | Cu-oxidase_2 | 431 | 541 | 7.10E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0046274 | Biological Process | lignin catabolic process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0052716 | Molecular Function | hydroquinone:oxygen oxidoreductase activity |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 118.830 |
| SRR2545915 | Juvenile tuber | 298.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 793.840 |
| SRR5643514 | five period of Gastrodia elata | 295.770 | |
| SRR5643515 | five period of Gastrodia elata | 962.290 | |
| SRR5643524 | five period of Gastrodia elata | 726.300 | |
| SRR5643525 | five period of Gastrodia elata | 307.490 | |
| SRR5643528 | five period of Gastrodia elata | 885.080 | |
| SRR5643658 | five period of Gastrodia elata | 185.780 | |
| SRR5643659 | five period of Gastrodia elata | 807.110 | |
| SRR5643660 | five period of Gastrodia elata | 542.330 | |
| SRR5643661 | five period of Gastrodia elata | 914.280 | |
| SRR5643662 | five period of Gastrodia elata | 553.380 | |
| SRR5643663 | five period of Gastrodia elata | 493.170 | |
| SRR5643664 | five period of Gastrodia elata | 612.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 358.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 284.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 290.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 369.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 178.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 200.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 340.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 258.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 194.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 254.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 226.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 226.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 224.65 |
| Juven | Juvenile tuber | 245.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,394.14 | |
| Mother_Juven | Mother tuber of Juvenile | 2,124.97 |