Detail information of GWHGAAEX016068/evm.TU.scaffold_72.103
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428315050|ref|YP_007119067.1| | 2.00E-09 | ankyrin [Oscillatoria nigro-viridis PCC 7112] |
| KOG | KOG0521 | 0 | Putative GTPase activating proteins (GAPs) |
| nr | gi|672134096|ref|XP_008790692.1| | 0 | PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q5W7F2|AGD3_ARATH | 0 | ADP-ribosylation factor GTPase-activating protein AGD3 |
| trEMBL | tr|M0SJS3|M0SJS3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P00060_001} |
| TAIR | AT5G61980 | 0 | ARF-GAP domain 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 3793741 | 3872471 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016068
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16746.4 | BAR_3 | 6 | 233 | 1.20E-40 |
| PF00169.28 | PH | 294 | 429 | 3.20E-11 |
| PF01412.17 | ArfGap | 506 | 641 | 6.20E-35 |
| PF12796.6 | Ank_2 | 751 | 833 | 5.90E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12489 | ACAP | Endocytosis | map04144 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005096 | Molecular Function | GTPase activator activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.760 |
| SRR2545915 | Juvenile tuber | 10.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.740 |
| SRR5643514 | five period of Gastrodia elata | 10.710 | |
| SRR5643515 | five period of Gastrodia elata | 9.780 | |
| SRR5643524 | five period of Gastrodia elata | 12.320 | |
| SRR5643525 | five period of Gastrodia elata | 9.890 | |
| SRR5643528 | five period of Gastrodia elata | 7.540 | |
| SRR5643658 | five period of Gastrodia elata | 9.270 | |
| SRR5643659 | five period of Gastrodia elata | 7.850 | |
| SRR5643660 | five period of Gastrodia elata | 7.970 | |
| SRR5643661 | five period of Gastrodia elata | 6.200 | |
| SRR5643662 | five period of Gastrodia elata | 5.120 | |
| SRR5643663 | five period of Gastrodia elata | 6.380 | |
| SRR5643664 | five period of Gastrodia elata | 6.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.64 |
| Juven | Juvenile tuber | 12.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.30 | |
| Mother_Juven | Mother tuber of Juvenile | 16.14 |