Gene detail

Detail information of GWHGAAEX016072/evm.TU.scaffold_72.108

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	3.00E-06	FOG: Predicted E3 ubiquitin ligase
nr	gi\|743853447\|ref\|XP_010940659.1\|	3.22E-13	PREDICTED: uncharacterized protein LOC105059137 [Elaeis guineensis]
trEMBL	tr\|A0A061ESU2\|A0A061ESU2_THECC	2.00E-09	RING/U-box superfamily protein, putative isoform 4 {ECO:0000313\|EMBL:EOY05374.1}
TAIR	AT1G04790	3.00E-06	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000071	3980640	3999040	+

Transcript Sequence
>GWHTAAEX016072 TTATGTACCTTGAATTTTACTTTTTGCATTTATTTATTTTTACTTTGCTTCAAAATTGTTCCATGTTAATGATAAATTATTTTACTGTCAAAAGAATGCCATGAATGTTTTTTCTTACGAATGAATGCCAGGGTTCAGAAAATGATGGATTATGTGGTGGGTCAAGTTAAGAACACGGCTAGTCTACTCTGGGAGTTATAAAGTTGTCATGCTATAGTCTACGAGTGGGCAAGTTTGATGTCTACTTTCTTATTATGATCTCATGGTCTAGCAGAACGAAGATAATGTTGTAACATAACACCAAGATATATACTAATAATATGGATGGGATGGAGATTGATGCACGTATTGATTCCTCTAAAAGGGTTAAAAGGAGTTCTCCAGATGATACCAATAGTGCAAAACCGATTTGGCAGCATAAACCATCAAGCATTACGGTCAATTCTCTTGAAAAACGATATTCAGTTACCCAGAAAAATTTAAGAAACCAGAATGGAAAGAATGGAGTTATAGTTTCTCCAAATGTGGGAAACTCATTTTCCTTTCAACCATGTGATGTGAGGATTAAAGGGAAAGAACTTGAAAGCAAGAGAAATGACAGGGAGAACTCTTTAGTTTTGGAGGCATCTACATCCAATAGATTAATGGTGAGAAAGCATGATGATATCACAAATCGTTCAATAAAAGACAAGGAGGTTTCATCTCATGTTGGTGTTCGTTTGAAGTCTCAAATAAATGGGCATGATAAAGCATTATCAAAGACATCATATATTGATTCATTTGCGGGGAATACAGGATGGGCTGAAGCCATTTCAAGAAAAAATGAAGAAAAATCTGCATCCCAAGATCCTTCAGGTGGAGTTTCAACACTTGAAGTGAAGTCTACCCACGTACTACATTCTGAATCTCATCATGCTATCAAGAAGAAAGGGAAACTGATTTTCGGGGATGATATGCAATACAGTGAACCCACTAGTCAATACATCAGGGCTTCTTTATTTGGGAAAGAGGTGGCGACCATTGCAGAAGAACAAGAATCTTCTTTTAAATTTGGCCAAAATTTGGATCAGCAAAAATGTCACGATTTCAAATTAAATATGCAAAACCAATCATTGCATGAATTTCAAAGCTTTTATAATGAAAATTTTTGCTCTTCCAACTTTACTGAACAAAGGCATGAAACTGATGTTGAGAATTTTTCCTACAAAAATCCTTTAACCACTATACATAATTACAGATCAAGTTCACTATACAAAAATCCTTTAACCACTATACGTCATGCTCAAGCATTTCCTGACTCAGTGGTTAACGAAAGGAATTACAGCTGGAAAAAACATGTAAAGGGTAAAGAGAAATCCAAGTCATCACTCCCCAATTTTAGAAAAACATCTGGCCCAAATTTAAATCAGCAATCTCATCTTCCTAGTTCAGAATCATCTGATTTTGAAGCTGACAAGAGAAATAAAAATAGATGTCATGGTACCACTTCAATGGAAATTGATAATATTTATCCAGAAATAACAAACTGCACTTTACGTGGGCAACAGATTGGAGTTTTTGATTCCTGTGCAAGAGCTAGTCAAATTGAATCTGATGAAAAATTTGCTCGTGAGCTTCAGCAGCAATTTTATCATGAAACCACAAGGTTTATTGACATGGAGAAGAAAGATGAAACAATTGCATGGTCACTGCAACAGGATGAGGATGTCGATGTTGCACTTGTCTTTGAGGGTCTTTCTAAAACTATAAGTTGATGATTTTATTGTTACCAGGTTTTTGCCAAGTACTATCCTAGGTGCCTCTGCATTTTCACTGCTAATTAGATTTTTCCCAATTAATTAAATAAAACTCACAAACTTGTTAAATAGTTTTAATATTTTGTTTATTAAATGTATTAATTAATTATATGAAATATATGATTATTACATTTGAGATCATTTTCTTAGGGCATTCTCCACAAAAGTTCAACTCAGACCATCTTGACACCTTTCTCCCAAGCCTATTTACTCATTATAGCAAAAAGCTTAAAGTTCTCTTTTTAATTCTTATTTTTGTAATTAAGACATTTATTTTGACTTGTAATTTTCATCTTTACTTAGGGTTAGGTGCTTCAACATTCTTTGCGTCAACATAAATGTTGGTCTTAATATTAAACGGTGATAAATAATCTATTTTCTTGATTATGACCAAAACACTTCTGTAAATTTACAATTTTTCTTACTTGCCTTGTTTATGAGTTGTTAGATAACATTCTAACAATTCATATTTTCTCTTTTTTTTTTTTTTTCTTTT

Network for GWHGAAEX016072

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.640
SRP064423	SRR2545915	Juvenile tuber	32.420
SRP108465	SRR5643513	five period of Gastrodia elata	4.060
	SRR5643514	five period of Gastrodia elata	4.790
	SRR5643515	five period of Gastrodia elata	4.320
	SRR5643524	five period of Gastrodia elata	5.010
	SRR5643525	five period of Gastrodia elata	3.620
	SRR5643528	five period of Gastrodia elata	1.160
	SRR5643658	five period of Gastrodia elata	1.850
	SRR5643659	five period of Gastrodia elata	4.520
	SRR5643660	five period of Gastrodia elata	4.580
	SRR5643661	five period of Gastrodia elata	3.530
	SRR5643662	five period of Gastrodia elata	3.760
	SRR5643663	five period of Gastrodia elata	4.610
	SRR5643664	five period of Gastrodia elata	2.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.200
SRP279888	Gastro	Gastrodia elata tuber	3.38
	Juven	Juvenile tuber	5.90
	Mother_Gastro	Mother tuber of Gastrodia elata	12.59
	Mother_Juven	Mother tuber of Juvenile	6.96