Detail information of GWHGAAEX016073/evm.TU.scaffold_72.109
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|268317750|ref|YP_003291469.1| | 3.00E-60 | AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252] |
| KOG | KOG1176 | 4.00E-73 | Acyl-CoA synthetase |
| nr | gi|695077087|ref|XP_009385865.1| | 8.70E-105 | PREDICTED: putative 4-coumarate--CoA ligase-like 8 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q84P21|4CLL5_ARATH | 1.00E-73 | 4-coumarate--CoA ligase-like 5 |
| trEMBL | tr|M0U685|M0U685_MUSAM | 7.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP04230_001} |
| TAIR | AT1G20510 | 4.00E-73 | OPC-8:0 CoA ligase1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 4033132 | 4036931 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016073
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00501.27 | AMP-binding | 3 | 111 | 8.10E-37 |
| PF13193.5 | AMP-binding_C | 120 | 195 | 9.70E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10526 | OPCL1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.620 |
| SRR5643514 | five period of Gastrodia elata | 0.090 | |
| SRR5643515 | five period of Gastrodia elata | 0.350 | |
| SRR5643524 | five period of Gastrodia elata | 0.200 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.130 | |
| SRR5643658 | five period of Gastrodia elata | 0.090 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.110 | |
| SRR5643662 | five period of Gastrodia elata | 0.110 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.04 |
| Juven | Juvenile tuber | 0.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.73 | |
| Mother_Juven | Mother tuber of Juvenile | 0.81 |