Detail information of GWHGAAEX016074/evm.TU.scaffold_72.110
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|11498897|ref|NP_070128.1| | 5.00E-49 | transcription initiation factor IIB [Archaeoglobus fulgidus DSM 4304] |
| KOG | KOG1597 | 0 | Transcription initiation factor TFIIB |
| nr | gi|743779494|ref|XP_010920217.1| | 0 | PREDICTED: transcription initiation factor IIB [Elaeis guineensis] |
| Swissprot | tr|Q8W0W3|TF2B_ORYSJ | 0 | Transcription initiation factor IIB |
| trEMBL | tr|M0S1U5|M0S1U5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21370_001} |
| TAIR | AT3G10330 | 0 | Cyclin-like family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 4040876 | 4057381 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016074
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08271.11 | TF_Zn_Ribbon | 6 | 47 | 3.40E-17 |
| PF00382.18 | TFIIB | 112 | 176 | 4.60E-20 |
| PF00382.18 | TFIIB | 214 | 281 | 2.70E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03124 | TFIIB, GTF2B, SUA7, tfb | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0070897 | Biological Process | DNA-templated transcriptional preinitiation complex assembly |
| GO:0017025 | Molecular Function | TBP-class protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 167.410 |
| SRR2545915 | Juvenile tuber | 147.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 92.730 |
| SRR5643514 | five period of Gastrodia elata | 73.800 | |
| SRR5643515 | five period of Gastrodia elata | 93.260 | |
| SRR5643524 | five period of Gastrodia elata | 77.190 | |
| SRR5643525 | five period of Gastrodia elata | 106.930 | |
| SRR5643528 | five period of Gastrodia elata | 110.100 | |
| SRR5643658 | five period of Gastrodia elata | 95.960 | |
| SRR5643659 | five period of Gastrodia elata | 171.860 | |
| SRR5643660 | five period of Gastrodia elata | 182.470 | |
| SRR5643661 | five period of Gastrodia elata | 173.670 | |
| SRR5643662 | five period of Gastrodia elata | 202.370 | |
| SRR5643663 | five period of Gastrodia elata | 197.100 | |
| SRR5643664 | five period of Gastrodia elata | 229.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 116.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 101.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 112.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 142.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 152.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 171.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 137.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 128.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 94.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 116.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 89.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 89.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 185.04 |
| Juven | Juvenile tuber | 136.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 79.32 | |
| Mother_Juven | Mother tuber of Juvenile | 112.94 |