Detail information of GWHGAAEX016076/evm.TU.scaffold_72.113


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|32473827|ref|NP_866821.1|0NADH-glutamate synthase small chain [Rhodopirellula baltica SH 1]
KOGKOG03990Glutamate synthase
nrgi|743755813|ref|XP_010913556.1|0PREDICTED: glutamate synthase 1 [NADH], chloroplastic-like [Elaeis guineensis]
Swissprottr|Q03460|GLSN_MEDSA0Glutamate synthase [NADH], amyloplastic (Precursor)
trEMBLtr|A0A061G290|A0A061G290_THECC0NADH-dependent glutamate synthase 1 isoform 1 {ECO:0000313|EMBL:EOY23508.1}
TAIRAT5G534600NADH-dependent glutamate synthase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007141490244152464+
Transcript Sequence

Network for GWHGAAEX016076

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01645.16Glu_synthase1538.90E-18
PF01493.18GXGXG1353221.30E-88
PF14691.5Fer4_204515621.70E-21
PF07992.13Pyr_redox_25769017.60E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00264GLT1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Nitrogen metabolismmap00910
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0006537Biological Processglutamate biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0051536Molecular Functioniron-sulfur cluster binding
GO:0016639Molecular Functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
GO:0016491Molecular Functionoxidoreductase activity
GO:0003824Molecular Functioncatalytic activity
GO:0015930Molecular Functionglutamate synthase activity
GO:0016638Molecular Functionoxidoreductase activity, acting on the CH-NH2 group of donors

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms206.620
SRR2545915Juvenile tuber201.710
SRP108465SRR5643513five period of Gastrodia elata159.820
SRR5643514five period of Gastrodia elata157.470
SRR5643515five period of Gastrodia elata224.060
SRR5643524five period of Gastrodia elata228.090
SRR5643525five period of Gastrodia elata320.110
SRR5643528five period of Gastrodia elata881.840
SRR5643658five period of Gastrodia elata371.020
SRR5643659five period of Gastrodia elata193.810
SRR5643660five period of Gastrodia elata192.980
SRR5643661five period of Gastrodia elata179.670
SRR5643662five period of Gastrodia elata160.510
SRR5643663five period of Gastrodia elata175.000
SRR5643664five period of Gastrodia elata152.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1122.790
SRR6049655Rhizomagastrodiae_C368-T10_good_178.530
SRR6049656Rhizomagastrodiae_C368-T07_good_1106.800
SRR6049657Rhizomagastrodiae_C368-T07_good_1105.730
SRR6049658Rhizomagastrodiae_C368-T04_good_1102.500
SRR6049659Rhizomagastrodiae_C368-T04_good_193.400
SRR6049660Rhizomagastrodiae_C368-T01_good_199.630
SRR6049661Rhizomagastrodiae_C368-T04_good_193.320
SRR6049662Rhizomagastrodiae_C368-T01_good_1196.900
SRR6049663Rhizomagastrodiae_C368-T01_good_1185.380
SRR6049664Rhizomagastrodiae_C368-T10_good_1104.510
SRR6049665Rhizomagastrodiae_C368-T10_good_1104.510
SRP279888GastroGastrodia elata tuber 196.79
JuvenJuvenile tuber708.51
Mother_GastroMother tuber of Gastrodia elata 2,109.87
Mother_JuvenMother tuber of Juvenile 2,838.53