Detail information of GWHGAAEX016078/evm.TU.scaffold_72.116
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|158339731|ref|YP_001520738.1| | 3.00E-108 | trypsin-like serine protease, putative [Acaryochloris marina MBIC11017] |
| KOG | KOG1320 | 0 | Serine protease |
| nr | gi|695063906|ref|XP_009420477.1| | 0 | PREDICTED: protease Do-like 10, mitochondrial [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FIV6|DGP10_ARATH | 0 | Protease Do-like 10, mitochondrial (Precursor) |
| trEMBL | tr|M0RH46|M0RH46_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P10700_001} |
| TAIR | AT5G36950 | 0 | DegP protease 10 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 4208442 | 4246691 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016078
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13365.5 | Trypsin_2 | 118 | 247 | 1.50E-21 |
| PF13180.5 | PDZ_2 | 295 | 394 | 1.20E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.460 |
| SRR2545915 | Juvenile tuber | 9.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.120 |
| SRR5643514 | five period of Gastrodia elata | 11.460 | |
| SRR5643515 | five period of Gastrodia elata | 9.710 | |
| SRR5643524 | five period of Gastrodia elata | 11.670 | |
| SRR5643525 | five period of Gastrodia elata | 7.530 | |
| SRR5643528 | five period of Gastrodia elata | 11.230 | |
| SRR5643658 | five period of Gastrodia elata | 6.290 | |
| SRR5643659 | five period of Gastrodia elata | 10.620 | |
| SRR5643660 | five period of Gastrodia elata | 10.080 | |
| SRR5643661 | five period of Gastrodia elata | 11.000 | |
| SRR5643662 | five period of Gastrodia elata | 10.820 | |
| SRR5643663 | five period of Gastrodia elata | 11.170 | |
| SRR5643664 | five period of Gastrodia elata | 10.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.45 |
| Juven | Juvenile tuber | 14.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.53 | |
| Mother_Juven | Mother tuber of Juvenile | 17.80 |