Detail information of GWHGAAEX016082/evm.TU.scaffold_72.120
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|288931525|ref|YP_003435585.1| | 3.00E-16 | 30S ribosomal protein S8 [Ferroglobus placidus DSM 10642] |
| KOG | KOG1754 | 1.00E-51 | 40S ribosomal protein S15/S22 |
| nr | gi|743824919|ref|XP_010932902.1| | 1.60E-52 | PREDICTED: 40S ribosomal protein S15a-5-like [Elaeis guineensis] |
| Swissprot | tr|Q9M0E0|R15A5_ARATH | 4.00E-52 | 40S ribosomal protein S15a-5 |
| trEMBL | tr|B9RKC4|B9RKC4_RICCO | 9.00E-52 | 30S ribosomal protein S8, putative {ECO:0000313|EMBL:EEF48122.1} |
| TAIR | AT4G29430 | 1.00E-51 | ribosomal protein S15A E |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 4275712 | 4297818 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016082
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00410.18 | Ribosomal_S8 | 6 | 85 | 9.40E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02957 | RP-S15Ae, RPS15A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 148.430 |
| SRR2545915 | Juvenile tuber | 156.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 53.700 |
| SRR5643514 | five period of Gastrodia elata | 62.000 | |
| SRR5643515 | five period of Gastrodia elata | 64.750 | |
| SRR5643524 | five period of Gastrodia elata | 56.730 | |
| SRR5643525 | five period of Gastrodia elata | 77.630 | |
| SRR5643528 | five period of Gastrodia elata | 88.200 | |
| SRR5643658 | five period of Gastrodia elata | 71.390 | |
| SRR5643659 | five period of Gastrodia elata | 79.450 | |
| SRR5643660 | five period of Gastrodia elata | 92.490 | |
| SRR5643661 | five period of Gastrodia elata | 97.950 | |
| SRR5643662 | five period of Gastrodia elata | 109.150 | |
| SRR5643663 | five period of Gastrodia elata | 113.020 | |
| SRR5643664 | five period of Gastrodia elata | 113.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 50.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 40.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 113.47 |
| Juven | Juvenile tuber | 40.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.89 | |
| Mother_Juven | Mother tuber of Juvenile | 37.00 |