Detail information of GWHGAAEX016085/evm.TU.scaffold_72.123
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307154218|ref|YP_003889602.1| | 4.00E-87 | L-lactate dehydrogenase [Cyanothece sp. PCC 7822] |
| KOG | KOG1495 | 2.00E-173 | Lactate dehydrogenase |
| nr | gi|743854912|ref|XP_010941130.1| | 0 | PREDICTED: L-lactate dehydrogenase A-like [Elaeis guineensis] |
| Swissprot | tr|P22988|LDHA_HORVU | 6.00E-164 | L-lactate dehydrogenase A |
| trEMBL | tr|M0TFA7|M0TFA7_MUSAM | 0 | L-lactate dehydrogenase {ECO:0000256|RuleBase:RU000496} |
| TAIR | AT4G17260 | 2.00E-173 | Lactate/malate dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 4396007 | 4400628 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016085
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00056.22 | Ldh_1_N | 37 | 176 | 1.60E-43 |
| PF02866.17 | Ldh_1_C | 179 | 345 | 1.70E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019752 | Biological Process | carboxylic acid metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0016616 | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0004459 | Molecular Function | L-lactate dehydrogenase activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.860 |
| SRR2545915 | Juvenile tuber | 83.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 63.790 |
| SRR5643514 | five period of Gastrodia elata | 61.040 | |
| SRR5643515 | five period of Gastrodia elata | 83.740 | |
| SRR5643524 | five period of Gastrodia elata | 63.230 | |
| SRR5643525 | five period of Gastrodia elata | 28.810 | |
| SRR5643528 | five period of Gastrodia elata | 36.020 | |
| SRR5643658 | five period of Gastrodia elata | 21.100 | |
| SRR5643659 | five period of Gastrodia elata | 71.390 | |
| SRR5643660 | five period of Gastrodia elata | 62.990 | |
| SRR5643661 | five period of Gastrodia elata | 62.680 | |
| SRR5643662 | five period of Gastrodia elata | 69.350 | |
| SRR5643663 | five period of Gastrodia elata | 80.590 | |
| SRR5643664 | five period of Gastrodia elata | 71.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 71.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 109.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 66.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 46.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 64.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 44.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 91.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 111.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 95.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 95.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 105.49 |
| Juven | Juvenile tuber | 102.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 344.13 | |
| Mother_Juven | Mother tuber of Juvenile | 142.08 |