Detail information of GWHGAAEX016088/evm.TU.scaffold_72.126
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2044 | 0 | 5'-3' exonuclease HKE1/RAT1 |
| nr | gi|743883415|ref|XP_010909408.1| | 0 | PREDICTED: 5'-3' exoribonuclease 3-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9FQ03|XRN3_ARATH | 0 | 5'-3' exoribonuclease 3 |
| trEMBL | tr|A0A068UGS5|A0A068UGS5_COFCA | 0 | Coffea canephora |
| TAIR | AT1G75660 | 0 | 5'-3' exoribonuclease 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 4551867 | 4598121 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016088
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03159.17 | XRN_N | 1 | 253 | 8.60E-99 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12619 | XRN2, RAT1 | Ribosome biogenesis in eukaryotes | map03008 |
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0004534 | Molecular Function | 5'-3' exoribonuclease activity |
| GO:0004527 | Molecular Function | exonuclease activity |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.090 |
| SRR2545915 | Juvenile tuber | 54.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 47.150 |
| SRR5643514 | five period of Gastrodia elata | 47.450 | |
| SRR5643515 | five period of Gastrodia elata | 43.280 | |
| SRR5643524 | five period of Gastrodia elata | 45.700 | |
| SRR5643525 | five period of Gastrodia elata | 42.990 | |
| SRR5643528 | five period of Gastrodia elata | 32.220 | |
| SRR5643658 | five period of Gastrodia elata | 41.030 | |
| SRR5643659 | five period of Gastrodia elata | 40.630 | |
| SRR5643660 | five period of Gastrodia elata | 44.790 | |
| SRR5643661 | five period of Gastrodia elata | 39.250 | |
| SRR5643662 | five period of Gastrodia elata | 39.980 | |
| SRR5643663 | five period of Gastrodia elata | 41.350 | |
| SRR5643664 | five period of Gastrodia elata | 45.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 53.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 57.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 68.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 76.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 60.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 62.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 50.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 52.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.62 |
| Juven | Juvenile tuber | 79.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 49.51 | |
| Mother_Juven | Mother tuber of Juvenile | 63.17 |