Detail information of GWHGAAEX016089/evm.TU.scaffold_72.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|327405345|ref|YP_004346183.1| | 1.00E-11 | RNP-1 like RNA-binding protein [Fluviicola taffensis DSM 16823] |
| KOG | KOG0118 | 1.00E-67 | FOG: RRM domain |
| nr | gi|672131934|ref|XP_008789535.1| | 1.29E-106 | PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Phoenix dactylifera] |
| Swissprot | tr|Q9CAE4|U1131_ARATH | 3.00E-68 | U11/U12 small nuclear ribonucleoprotein 31 kDa protein |
| trEMBL | tr|A5AKR9|A5AKR9_VITVI | 1.00E-92 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN75783.1} |
| TAIR | AT3G10400 | 1.00E-67 | RNA recognition motif and CCHC-type zinc finger domains containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 4600163 | 4603853 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016089
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 56 | 125 | 3.90E-19 |
| PF00098.22 | zf-CCHC | 150 | 164 | 0.00023 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.670 |
| SRR2545915 | Juvenile tuber | 3.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.860 |
| SRR5643514 | five period of Gastrodia elata | 6.830 | |
| SRR5643515 | five period of Gastrodia elata | 6.680 | |
| SRR5643524 | five period of Gastrodia elata | 6.730 | |
| SRR5643525 | five period of Gastrodia elata | 6.280 | |
| SRR5643528 | five period of Gastrodia elata | 5.870 | |
| SRR5643658 | five period of Gastrodia elata | 7.630 | |
| SRR5643659 | five period of Gastrodia elata | 4.860 | |
| SRR5643660 | five period of Gastrodia elata | 6.180 | |
| SRR5643661 | five period of Gastrodia elata | 5.870 | |
| SRR5643662 | five period of Gastrodia elata | 5.110 | |
| SRR5643663 | five period of Gastrodia elata | 5.960 | |
| SRR5643664 | five period of Gastrodia elata | 5.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.20 |
| Juven | Juvenile tuber | 11.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.04 | |
| Mother_Juven | Mother tuber of Juvenile | 8.25 |