Detail information of GWHGAAEX016091/evm.TU.scaffold_72.129
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0335 | 5.00E-14 | ATP-dependent RNA helicase |
| nr | gi|703110269|ref|XP_010099539.1| | 5.03E-62 | DNA-binding protein HEXBP [Morus notabilis] |
| Swissprot | tr|Q65XV7|RFA1C_ORYSJ | 6.00E-09 | Replication protein A 70 kDa DNA-binding subunit C |
| trEMBL | tr|A5C1C7|A5C1C7_VITVI | 2.00E-65 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN70803.1} |
| trEMBL | tr|A5C1C7|A5C1C7_VITVI | 2.00E-07 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN70803.1} |
| TAIR | CE29052 | 5.00E-14 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000071 | 4673230 | 4690664 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016091
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14392.5 | zf-CCHC_4 | 2 | 18 | 1.9 |
| PF00098.22 | zf-CCHC | 22 | 38 | 1.10E-06 |
| PF14392.5 | zf-CCHC_4 | 41 | 57 | 0.052 |
| PF00098.22 | zf-CCHC | 82 | 96 | 9.00E-08 |
| PF00098.22 | zf-CCHC | 102 | 118 | 2.90E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.510 |
| SRR2545915 | Juvenile tuber | 40.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 88.130 |
| SRR5643514 | five period of Gastrodia elata | 92.400 | |
| SRR5643515 | five period of Gastrodia elata | 90.060 | |
| SRR5643524 | five period of Gastrodia elata | 81.540 | |
| SRR5643525 | five period of Gastrodia elata | 137.480 | |
| SRR5643528 | five period of Gastrodia elata | 139.960 | |
| SRR5643658 | five period of Gastrodia elata | 110.980 | |
| SRR5643659 | five period of Gastrodia elata | 81.050 | |
| SRR5643660 | five period of Gastrodia elata | 80.490 | |
| SRR5643661 | five period of Gastrodia elata | 94.710 | |
| SRR5643662 | five period of Gastrodia elata | 96.380 | |
| SRR5643663 | five period of Gastrodia elata | 91.560 | |
| SRR5643664 | five period of Gastrodia elata | 110.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 116.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 62.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 114.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 111.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 114.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 108.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 120.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 105.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 124.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 116.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 117.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 117.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 102.75 |
| Juven | Juvenile tuber | 73.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 83.06 | |
| Mother_Juven | Mother tuber of Juvenile | 51.25 |