Detail information of GWHGAAEX016094/evm.TU.scaffold_73.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310818411|ref|YP_003950769.1| | 4.00E-103 | cation transporter/universal stress family protein [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG1650 | 0 | Predicted K+/H+-antiporter |
| nr | gi|695012734|ref|XP_009393134.1| | 0 | PREDICTED: cation/H(+) antiporter 19-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LUN4|CHX19_ARATH | 0 | Cation/H(+) antiporter 19 |
| trEMBL | tr|C5YVA3|C5YVA3_SORBI | 0 | Putative uncharacterized protein Sb09g008200 {ECO:0000313|EMBL:EES19281.1} |
| TAIR | AT3G17630 | 0 | cation/H+ exchanger 19 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 26925 | 35493 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016094
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00999.20 | Na_H_Exchanger | 45 | 427 | 1.40E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006812 | Biological Process | cation transport |
| GO:0015299 | Molecular Function | solute:proton antiporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.620 |
| SRR2545915 | Juvenile tuber | 6.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.730 |
| SRR5643514 | five period of Gastrodia elata | 22.130 | |
| SRR5643515 | five period of Gastrodia elata | 23.060 | |
| SRR5643524 | five period of Gastrodia elata | 32.450 | |
| SRR5643525 | five period of Gastrodia elata | 8.530 | |
| SRR5643528 | five period of Gastrodia elata | 8.350 | |
| SRR5643658 | five period of Gastrodia elata | 4.420 | |
| SRR5643659 | five period of Gastrodia elata | 7.770 | |
| SRR5643660 | five period of Gastrodia elata | 9.950 | |
| SRR5643661 | five period of Gastrodia elata | 13.930 | |
| SRR5643662 | five period of Gastrodia elata | 8.360 | |
| SRR5643663 | five period of Gastrodia elata | 5.120 | |
| SRR5643664 | five period of Gastrodia elata | 3.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.10 |
| Juven | Juvenile tuber | 7.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 219.00 | |
| Mother_Juven | Mother tuber of Juvenile | 195.73 |