Detail information of GWHGAAEX016098/evm.TU.scaffold_73.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|325295317|ref|YP_004281831.1|2.00E-134ATP-grasp domain-containing protein [Desulfurobacterium thermolithotrophum DSM 11699]
KOGKOG12540ATP-citrate lyase
nrgi|720047861|ref|XP_010270942.1|0PREDICTED: ATP-citrate synthase alpha chain protein 2 [Nelumbo nucifera]
Swissprottr|Q2QNG7|ACLA3_ORYSJ0ATP-citrate synthase alpha chain protein 3
trEMBLtr|A0A067JHL1|A0A067JHL1_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP23347.1}
TAIRAT1G094300ATP-citrate lyase A-3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000076171078186298+
Transcript Sequence

Network for GWHGAAEX016098

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08442.9ATP-grasp_262033.00E-17
PF16114.4Citrate_bind2424178.30E-81
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01648ACLY Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Citrate cycle (TCA cycle)map00020
Carbon fixation pathways in prokaryotesmap00720

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms113.460
SRR2545915Juvenile tuber91.750
SRP108465SRR5643513five period of Gastrodia elata144.780
SRR5643514five period of Gastrodia elata147.780
SRR5643515five period of Gastrodia elata161.710
SRR5643524five period of Gastrodia elata168.550
SRR5643525five period of Gastrodia elata204.140
SRR5643528five period of Gastrodia elata312.210
SRR5643658five period of Gastrodia elata209.360
SRR5643659five period of Gastrodia elata150.450
SRR5643660five period of Gastrodia elata155.110
SRR5643661five period of Gastrodia elata155.320
SRR5643662five period of Gastrodia elata149.050
SRR5643663five period of Gastrodia elata152.140
SRR5643664five period of Gastrodia elata133.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1112.780
SRR6049655Rhizomagastrodiae_C368-T10_good_195.770
SRR6049656Rhizomagastrodiae_C368-T07_good_1120.300
SRR6049657Rhizomagastrodiae_C368-T07_good_1106.540
SRR6049658Rhizomagastrodiae_C368-T04_good_1113.170
SRR6049659Rhizomagastrodiae_C368-T04_good_1117.630
SRR6049660Rhizomagastrodiae_C368-T01_good_1106.590
SRR6049661Rhizomagastrodiae_C368-T04_good_1111.930
SRR6049662Rhizomagastrodiae_C368-T01_good_1127.000
SRR6049663Rhizomagastrodiae_C368-T01_good_1119.100
SRR6049664Rhizomagastrodiae_C368-T10_good_1145.900
SRR6049665Rhizomagastrodiae_C368-T10_good_1145.900
SRP279888GastroGastrodia elata tuber 162.93
JuvenJuvenile tuber195.90
Mother_GastroMother tuber of Gastrodia elata 235.39
Mother_JuvenMother tuber of Juvenile 311.02