Gene detail

Detail information of GWHGAAEX016101/evm.TU.scaffold_73.13

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428305571\|ref\|YP_007142396.1\|	3.00E-09	WD40 repeat-containing protein [Crinalium epipsammum PCC 9333]
KOG	KOG1786	0	Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins
nr	gi\|743768874\|ref\|XP_010914713.1\|	0	PREDICTED: probable inactive serine/threonine-protein kinase lvsG isoform X1 [Elaeis guineensis]
trEMBL	tr\|F6HE30\|F6HE30_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50282.1}
TAIR	AT5G18530	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	196192	242944	+

Transcript Sequence
>GWHTAAEX016101 ATGTCACCTTTGTTGGGTGTAATTAGTACTTCTGGTTATGACTATTTGTTGCACCCAATGGCTCCTTTCACTTTGGAAAGCATCCTTCATTACAGCCCAAATAGTTTGAAGTCAGATTGGCACATTAGAATTTTGATATACCAAATTTTTTCAGCTTTGAGATACATGCATGATTTAGGAATCGCGCATGGCAATTTGTGCCCTTCTAGTATTCTACTTTCTGAGTCATTGTGGGCCTGGCTTAGCCTTGCTAATATGCCAATTGTAAAAGGCAGAATTCGTAGAAATGGCCAAATTGCTACATCATTAGGCACAATTCGTTGTGAAGATTGTTGTCCCTGTGGAAGATATCAAGTTAATCTTAATTCCTCTATGACAATGAATTGGCACTCTAATTTCATGAAATGGTGGAAAGGTGAATTGAGCAACTATGAATACCTTTTGTTTTTGAATAAATTAGCTGGAAGAAGGTGGGGTGACCATACATTTCATACAGTCATGCCATGGGTCATTGATTTCAGTGTAAAGCCTGATGAAAAATCTGATATAGGTTGGAGAGACCTGAAGAAAAGCAAATGGAGGCTTGCAAAAGGTGATGAACAATTGGATTTCACCTACGCAACATCAGATATTCCACATCATGTTTCTGATGAATGCCTCTCAGAATTAGCTGTCTGCAGTTATAAAGCTAGAAGGCTACCTTTGCAAATACTTCGTTCTGCTGTTCGTTCAGTTTATGAACCTAATGAATATCCTTCAAACATGCAGAGACTTTACCAGTGGACTCCAGATGAGTGCATCCCTGAGTTCTATATTGATCCTCAAATTTTCTGTTCTATTCATTCTGAAATGAGCGATTTGGCTGTGCCTTCTTGGGCTTTGTCTCCAGAAGAATTTATTTTAGAGCATCGGGATGCTTTGGAAAGTGACCGTGTATCAAACTATATTCATCATTGGATTGATATAACCTTTGGTTATAAGCTTTCTGGTGAAGCATCTGTTGAAGCAAAAAATGTGATGCTTCCTGTATCTGATACATCAATGCCTAGGGCAATGGGACGTCGACAACTTTTTACTGGGCCACATCCTGTACGGCAAAAATTGAAGTCTCAGTCAGATTATGCTAGCAGAAAAGATGCTCATTGTAACCTCCACAGGGTACAAAATGAAGGCCTGGTGGTATCTGATGAGAGATCAGGTCCTGGTTGTGCTTTGCTATTTTCTTCTGCAGATTATCATCCTTTAGATTGTAACTATTTGGAAAATTTAGAGGCTGCAATTTCATTTTGTGAATCCGCAGGGCACTTAAATCCAGTTTATAGTTATGATAATAGTTTTCTTGAGAAGTTTCCTTTTGTAAGTTTTTCACATAGGGACGATGATGACTTTGATGCTGATGCTGGTTATTGTAGTATGACTGGTTTAGAGATGATGAAAAAAAGTTCTTCAACGCCTTTTCCTTTTGGCTTGGGTCATCTTCTTGATTGTTTTGAAAGCGACGATAATGGCTCTACAGGCTTTCAGGAATTGTTGCGTTGGAGGCATTTATCGTCTCCTTCTAGAAGTTGTTATTCTGAAGATCTTGCAGAGGATGTATTTTCTGTTGGGTGTATAATGGCTGAGCTCTATTTGAAAAAGCCACTCTTTGACCCCATCTCTTTAAGTGCATACAAAGAAAGTGGGGTGCTGCCAGGTGCTATGCAGGAGCTTCCCCCTTGTGTCGCAATACTTGTTGAAGCAGCTATTCAAAGAGATTGGAAAAGGAGGCTTTCAGCTAAATGTTTTCTGGAGTCACCATTTTTTTCTGAATCAGTTAGAGGTGCGTATTTGTTCTCAGCTCCACTAAAACTTTTATCCAGACCTGGTTATCGTTTGCGATATGCTGCAAGGCTTGCTAGTGAAGGTGCTTTGAAAGCGATGGGAGCATATGCTGCAGAAATGTGTGCTTCATACTGTTTACCGCTTATCATGTCAGCTTTTTCAGATCTTGAGGCTGAGTCTGCTATGTGCTTATTGAAAGAATTCTTGAAGTGTCTTAACTCTCAGGCAATTAAAGAGCTATTCATACCTACCATACAGAAGATTTTACAGGTATCAGATTATTCACATCTAAAGGTCTCTATTCTCCAAGAATCTTTTGTTCATGATCTGTGGAAACAATTGGGTATACAAGCATATCTAGAAAGTATTCATCCTTTGGTGATATCGAACTTATACAACTCACCAAATAATGTATTTGCTTCTATTGCATCGGTGGTTTTAGTTGGCTCTAGTGAAGAACTTGGCATCCCCATTACGGTTCATCAGACACTCTTGCCTGTCATCCACTGTTTTGGTAAAGGCCTCTCTGCTGACGGAATCGATGCTCTTGTTAGAATTGGTGGGCTTTTTGGAGAAAATTTCATTGTCAAACAGCTTCTACCATTAATACGGAATCTTATTCTCACTTGTATTGATCCTTCGTATATGAACAGGCCTGAGCCTGCACACAGCTGGATAAATTTAGTTTTGGTTGATAGTTTTTCTTTCTTGGATGGGCTTGTTTTTCTCTTGCCGCCTGAAATAATTCTAAGAGAGCTGATTCAGGAACAAACCTGTCTCCATATTAAGACTCTCATGCAGACTCATTTGGATCTCCCTGTGCTTCAGGCTGCTGCCACTGCACTTATTGTAGTTTCTCAGAGGATTGGTTCAGAATCAACGACTTCATATATCATACCACAGCTGAAGAGAATATTTGATGACTTGGCTTTTTCTCAGCCATATTCCGAGGCTAGTTTTAGTGAAGAAAGCTCCAAGATTTTGAAACCAAACTTTGTTGAAAAATTTCAGATCGGATGCAGAATGGATTTAGTGTTTTTGTTATATCCTTCTTTTGCTTGCCTCATCGGAATTGAGAGACTTCGTCATTCCTGTTCGTCTTGGTTTCTTTTGGAGCAAATTCTTAATCGAGACCACAATTGGCAGTGGAACTCTGTTGGGGAAAATTCTAGAAGCATTGGAGGAAGCACAAATTTTCAAAGTCGTAAAGCTAACAAATCTTTGCCTGAGTACAACCCTGCAAAACTTCTTTTGAATGGGGTTGGGTGGTCTGTTCCGCAATCAAAAGGACTTCTGGGTGGCATGAGTTTGATGAATTGCAACCAAGAAAATGAGATTCAACAAAGTTCAAAAGTTTCCATGACAACTAACTCTGAACAAAACGAACCTTGGTTTTGGTTTCCTAGTTCGGATTTCAACTGTGATTTACCAGATTTTCTTGGTCGAACTAGTAGTTTAAAAGATGAATTTCCTTGGAAGATTAGGGCTTCAATTCTGTACTCTACTCGCATACATCCTGGGGCAATAAGATCATTGGCAGTTCTTAGCGATGAAACTACGATTTATACTGGAGGGGTTGGTCCTGGATTCAAAGGAAGTGTTCAGAAGTGGGAACTTCCTAGAATGAAATTCAAATCAGGTTATTATGGTCATGATGAGGTTGTTAATTCTATGTGTGTGCTGTCAGTTAGTGAAAAGATAGCTTCTTGTGATGGTACTATTCACATATGGAATGGACAAACAGGGAAACTTATTACTGCTTATGCAGAATCTTCGAATTCTGCATATCATGTTGCAGCAACAACAGCTAAAGCCACTGCAGAACAGACTAGCATGTTGACACCCTATTCTCCTTCTGGTGGATTATTGTCCAATGCTTTCAATGGAAATCTCTACACATGCATGCATCACCTAGAATGCAATCAAAAGCTCATTGCAGGCATGGGGAACGGTTCAATTAGGTATATTGATGTCCTTCGAGATCAAAAGCTACATTTGTGGAAAACTGAGGCGGCAGAATGTTCTTTTACATCCCTTGTTTCAGCTATTTGTTCCTGCGGTTCTGAAAAACTTTATGAAGAAAGAGCTATTGCTTCACCATCCTGGATCGCAGTGGCTTTAAGCACAGGTTATTGTAGGTTGCTTGATACAAGGAGTGGAAGTGTTATTGCTTTCTGGCGAGCACATGATGGCTATATTACTAAGTTGGCTGCTCCTATGGACCATTTGCTTTTGTCTAGCTCCCTTGATAAGACTGTTCGTGTTTGGGATCTCAGAAGGAATTTGGCTGCTCAAACTAACATTTTCCGCGGCCATCTGGATGGTATCTCCAGCTTCTGTGTTTGGGGGCAGGATGTGATATCCATTTCGGGAAATAAGATTGCACTCACATCTGTTTCTCGATCCATGGACGAACAGAAAGTTTCACCGCAGAAGCTTTACATGGCAGATAGCGGAATGCGAAATCTTTCAGCACTTTCTGCAATCAGCATTCTTCCTTTCTCTCGGCTGCTTTTACTTGGAACAGAGGACGGCTGTCTGAAGATCTGCTGCTAA

Network for GWHGAAEX016101

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02138.17	Beach	135	344	2.00E-40
PF00400.31	WD40	1155	1185	0.1
PF00400.31	WD40	1332	1364	0.033

Protein Sequence

>GWHPAAEX016101
MSPLLGVISTSGYDYLLHPMAPFTLESILHYSPNSLKSDWHIRILIYQIFSALRYMHDLGIAHGNLCPSSILLSESLWAWLSLANMPIVKGRIRRNGQIATSLGTIRCEDCCPCGRYQVNLNSSMTMNWHSNFMKWWKGELSNYEYLLFLNKLAGRRWGDHTFHTVMPWVIDFSVKPDEKSDIGWRDLKKSKWRLAKGDEQLDFTYATSDIPHHVSDECLSELAVCSYKARRLPLQILRSAVRSVYEPNEYPSNMQRLYQWTPDECIPEFYIDPQIFCSIHSEMSDLAVPSWALSPEEFILEHRDALESDRVSNYIHHWIDITFGYKLSGEASVEAKNVMLPVSDTSMPRAMGRRQLFTGPHPVRQKLKSQSDYASRKDAHCNLHRVQNEGLVVSDERSGPGCALLFSSADYHPLDCNYLENLEAAISFCESAGHLNPVYSYDNSFLEKFPFVSFSHRDDDDFDADAGYCSMTGLEMMKKSSSTPFPFGLGHLLDCFESDDNGSTGFQELLRWRHLSSPSRSCYSEDLAEDVFSVGCIMAELYLKKPLFDPISLSAYKESGVLPGAMQELPPCVAILVEAAIQRDWKRRLSAKCFLESPFFSESVRGAYLFSAPLKLLSRPGYRLRYAARLASEGALKAMGAYAAEMCASYCLPLIMSAFSDLEAESAMCLLKEFLKCLNSQAIKELFIPTIQKILQVSDYSHLKVSILQESFVHDLWKQLGIQAYLESIHPLVISNLYNSPNNVFASIASVVLVGSSEELGIPITVHQTLLPVIHCFGKGLSADGIDALVRIGGLFGENFIVKQLLPLIRNLILTCIDPSYMNRPEPAHSWINLVLVDSFSFLDGLVFLLPPEIILRELIQEQTCLHIKTLMQTHLDLPVLQAAATALIVVSQRIGSESTTSYIIPQLKRIFDDLAFSQPYSEASFSEESSKILKPNFVEKFQIGCRMDLVFLLYPSFACLIGIERLRHSCSSWFLLEQILNRDHNWQWNSVGENSRSIGGSTNFQSRKANKSLPEYNPAKLLLNGVGWSVPQSKGLLGGMSLMNCNQENEIQQSSKVSMTTNSEQNEPWFWFPSSDFNCDLPDFLGRTSSLKDEFPWKIRASILYSTRIHPGAIRSLAVLSDETTIYTGGVGPGFKGSVQKWELPRMKFKSGYYGHDEVVNSMCVLSVSEKIASCDGTIHIWNGQTGKLITAYAESSNSAYHVAATTAKATAEQTSMLTPYSPSGGLLSNAFNGNLYTCMHHLECNQKLIAGMGNGSIRYIDVLRDQKLHLWKTEAAECSFTSLVSAICSCGSEKLYEERAIASPSWIAVALSTGYCRLLDTRSGSVIAFWRAHDGYITKLAAPMDHLLLSSSLDKTVRVWDLRRNLAAQTNIFRGHLDGISSFCVWGQDVISISGNKIALTSVSRSMDEQKVSPQKLYMADSGMRNLSALSAISILPFSRLLLLGTEDGCLKICC

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.800
SRP064423	SRR2545915	Juvenile tuber	16.970
SRP108465	SRR5643513	five period of Gastrodia elata	8.070
	SRR5643514	five period of Gastrodia elata	8.520
	SRR5643515	five period of Gastrodia elata	8.300
	SRR5643524	five period of Gastrodia elata	8.940
	SRR5643525	five period of Gastrodia elata	7.910
	SRR5643528	five period of Gastrodia elata	15.110
	SRR5643658	five period of Gastrodia elata	8.520
	SRR5643659	five period of Gastrodia elata	7.340
	SRR5643660	five period of Gastrodia elata	7.440
	SRR5643661	five period of Gastrodia elata	7.320
	SRR5643662	five period of Gastrodia elata	7.260
	SRR5643663	five period of Gastrodia elata	8.280
	SRR5643664	five period of Gastrodia elata	7.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.420
SRP279888	Gastro	Gastrodia elata tuber	13.11
	Juven	Juvenile tuber	12.58
	Mother_Gastro	Mother tuber of Gastrodia elata	18.20
	Mother_Juven	Mother tuber of Juvenile	29.39