Detail information of GWHGAAEX016104/evm.TU.scaffold_73.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336121218|ref|YP_004575993.1| | 2.00E-06 | 30S ribosomal protein S27ae [Methanothermococcus okinawensis IH1] |
| KOG | KOG0004 | 2.00E-21 | Ubiquitin/40S ribosomal protein S27a fusion |
| nr | gi|336283384|gb|AEI29167.1| | 4.18E-23 | ubiquitin-like protein [Phalaenopsis hybrid cultivar] |
| Swissprot | tr|P62981|RS27A_SOLTU | 2.00E-23 | 40S ribosomal protein S27a (Precursor) |
| trEMBL | tr|F8SVM3|F8SVM3_9ASPA | 2.00E-23 | Ubiquitin-like protein {ECO:0000313|EMBL:AEI29167.1} (Fragment) |
| TAIR | AT2G47110 | 2.00E-21 | ubiquitin 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 323211 | 336057 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016104
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01599.18 | Ribosomal_S27 | 2 | 34 | 1.60E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02977 | RP-S27Ae, RPS27A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.760 |
| SRR2545915 | Juvenile tuber | 9.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 1.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 6.33 |