Gene detail

Detail information of GWHGAAEX016110/evm.TU.scaffold_73.23

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1172	Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family)
nr	gi\|672182554\|ref\|XP_008811526.1\|	PREDICTED: probable boron transporter 2 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9M1P7\|BOR2_ARATH	Probable boron transporter 2
trEMBL	tr\|D7U2N7\|D7U2N7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37003.3}
TAIR	AT3G62270	HCO3- transporter family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	536780	543529	-

Transcript Sequence
>GWHTAAEX016110 CGAACTTTATATATATATAATATATTTTTGAAGTGCAGCTCACTCATGGAGCCATAGGCAACAAAACAAAAGCTTTAAACCCTACTTGCCGCCGCAGCGGCCAACCGGCTGCCGCACCGCCGCCATTCCGGCCGACGTTCTGATTCGACAAAAAAGATTGAAACTTGCACTTCGATTATGCCTGGAAGCATGGAAGAGACATTTGTGCCTTTTCGAGGGATAAATAATGATCTCAGAGGAAGACTGATGTGTTACAAGCAGGACTGGATTGGAGGATTCCGTGCTGGCATTAGAATTCTGGCTCCTACAACCTACATATTCTTTGCTTCAGCAATTCCTGTAATATCATTTGGGGAGCAATTGGAAAGAAGCACTGATGGTGTAATTACTGCTGTGCAAACCCTGGCTTCTACTGCACTTTGTGGGATCGTACACTCAATTGTTGGAGGCCAGCCTTTGCTGATTCTTGGAGTTGCAGAGCCCACAGTGCTCATGTACACATTCATGTTTGACTTTGTGAAGGATCGATCGGATTTAGGCCGAAAGTTGTTTCTGGCTTGGACTGGATGGGTGTGTGTGTGGACTGCCTTCCTGCTCTTCTTACTGGCTATTCTGGGTGCATGCTCAATTATCAATAGATTCACAAGAGTAGCTGGTGAACTATTTGGTTTGCTGATTGCTATGCTTTTTATGCAGCAAGCTATTAAAGGGCTTGTGGACGAGTTTGGCATACCTAAAAGGGAAGATCGAAAGGCACCAGAGTTTATTCCCTCTTGGAGATTCAGCAATGGGATGTTTGCTCTCGTTCTATCATTTGGTCTTCTTCTTACTGCTTTGAGAAGTAGAAAGGCGCGGTCTTGGCGATATGGTTGTGGTTGGTTGAGAGGCTTCATTGCAGATTACGGGGTGCCTCTAATGGTTTTGGTATGGACTGCGGTTTCTTACGTACCTTCTGGTAGTGTCCCCAATGGGATACCAAGACGCCTTTTCAGCCCAAATCCTTGGTCATTCGGTGCATATGAGAATTGGACTGTCATTAAGAAAATGTTGGACGTGCCGGTGATATATATATTTGGAGCATTTATTCCAGCAACAATGATAGCAGTTCTTTATTATTTTGATCACAGTGTGGCATCTCAGCTTGCACAGCAGAAAGAGTTCAATTTGAGAAAGCCTCCTTCTTTTCATTATGATTTACTTCTTTTGGGCTTTTTGACTTTACTCTGTGGCCTTATTGGCATTCCCCCATCAAATGGAGTGATTCCACAGTCCCCTATGCATACAAAGAGTTTGGCTACTCTAAAGCATCAACTGCTCCGTAACCGATTAGTAGCCTCTGCGAGGCAAAGCATGAATCATAATTCAAGCATAAGTCAATTGTATGGCAATATGGAAGAAGCATATCAACAAATGCAGACCCCTCTGATCTATCAGGAGCAATCTGTTCGGGGATTGAAGGAACTGAAAGAATCTACCATTCAAATGGTATCAAGCTTGGGGAGCATTGATGCTCCTGTGGATGAGATGGCATTCGACATTGAGAAGGAGATTGATGATTTATTGCCCGTCGAGGTTAAAGAACAGCGTCTCAGCAACATGTTACAGTCCTTTATGGTGGCATGCTGTGTCGCTGCTATGCCGATTCTCAAAAAGATCCCAACTTCTGTACTTTGGGGTTACTTTGCTTTTATGGCCATAGAAAGCTTGCCTGGCAACCAGTTCTGGGAGAGGATACTCCTACTCTTTACTGCACCAAGCAGAAGATACAAAGTGCTAGAGGAGTATCATGCAACCTTTGTGGAAACTGTTCCCTTCAAGACAATTGCTCTGTTCACCCTCTTCCAGACTGCTTACCTTCTTGTGTGCTTCGGCATTACGTGGATTCCTATTGCCGGTGTCCTTTTTCCACTCATGATTATGCTTCTGGTTCCTGCAAGGCAGTATCTTCTTCCTAAGCTCTTCAAAGGGGCTTACCTCACAGATTTGGATGCAGCAGAGTACGAAGAGTCTCCTGCGATTCCATTCAATATAGAAACAGAGCTGAAGGCAGCCGCAAGTCATTCCTTTTCTCGAAGTGGGGAACTTCTGGATGAGCTAGTCACCAGAAGCCGAGGAGAGATTAAGCACATAAACAGTCCCAAAGTAAATAGCTCAACCGCAACACCAGGCAGCGACCAAAGGGGATTATACAGCCCTTCTGCTCTCTCAGAGAGGGCTTTCAGCCCACGTATAAGCGAGCTCAGACAGGAAAGCACCACTCCTATGGGTTGGAGAGGATCATTCAGTAGCCCACAAACAGGAGATGCGATCAAACCTTCTAGATTGAAGCAGCGAGCAGAGGAATCAACTTTAATGAAGTAGCTACGAAAAAATCCTTCTTTGGCTCTCAAAACATATGATTTTCTCTAGTGGCAGCTTTAATTAAGCTTTTCTGGATATCTTATAGCATTTCCCCTTATTATGTAAAACGTATATTAATAGAGAGTGTAGAATGTGCTGTCTTGTCTCATTTTTTCGCTTTTCATTGTTTACTGTAATATGAATAATGCCATGTTCAGCTTTTTTGAGAGAGAATTCCTGCTCTGTACAGAAGATATGTAAAAGCCAAAGAGTTTGAGAGTGAAATGCAAGAAGATATGTTCTCTGAAATTAAATGGGCACTGATTAATGGCAGACAGCCAATTCAAAGAGTCTAATCCGAGCTTTATGAACTCGTTGGCATTTAGCTTTTGGGGATCGCGTTATTTAGCACACAAGATTAATAGTATAAAACTGTATTGTCCCATACTTGTTTATGTATAAAAGGGTTTCTTAATGGGAGTTGGATTCTCTATCTTTAGCTTCCTTTTAGTTTATTGGCACAAATATTTAAATGTTGATTTATTTGGTTTTGGATTCAGTTTATCATTTAACTAATTA

Network for GWHGAAEX016110

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00955.20	HCO3_cotransp	6	182	4.40E-35
PF00955.20	HCO3_cotransp	206	376	6.10E-24
PF00955.20	HCO3_cotransp	464	554	3.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006820	Biological Process	anion transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.740
SRP064423	SRR2545915	Juvenile tuber	20.010
SRP108465	SRR5643513	five period of Gastrodia elata	82.930
	SRR5643514	five period of Gastrodia elata	112.350
	SRR5643515	five period of Gastrodia elata	75.430
	SRR5643524	five period of Gastrodia elata	125.590
	SRR5643525	five period of Gastrodia elata	348.540
	SRR5643528	five period of Gastrodia elata	359.120
	SRR5643658	five period of Gastrodia elata	351.330
	SRR5643659	five period of Gastrodia elata	22.880
	SRR5643660	five period of Gastrodia elata	13.300
	SRR5643661	five period of Gastrodia elata	27.380
	SRR5643662	five period of Gastrodia elata	29.150
	SRR5643663	five period of Gastrodia elata	30.500
	SRR5643664	five period of Gastrodia elata	14.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	59.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	67.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	77.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	74.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	66.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	67.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	67.930
SRP279888	Gastro	Gastrodia elata tuber	34.11
	Juven	Juvenile tuber	33.81
	Mother_Gastro	Mother tuber of Gastrodia elata	85.18
	Mother_Juven	Mother tuber of Juvenile	39.42