Detail information of GWHGAAEX016114/evm.TU.scaffold_73.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672127669|ref|XP_008787305.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420 [Phoenix dactylifera] |
| Swissprot | tr|Q9FZ19|PPR5_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At1g02420 |
| trEMBL | tr|A0A061DTE9|A0A061DTE9_THECC | 0 | Pentatricopeptide repeat superfamily protein isoform 1 {ECO:0000313|EMBL:EOX95371.1} |
| TAIR | AT1G02420 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 597962 | 599770 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016114
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 105 | 132 | 0.18 |
| PF01535.19 | PPR | 178 | 201 | 0.77 |
| PF13041.5 | PPR_2 | 238 | 285 | 2.00E-16 |
| PF13041.5 | PPR_2 | 308 | 355 | 7.60E-11 |
| PF01535.19 | PPR | 386 | 411 | 0.28 |
| PF01535.19 | PPR | 421 | 444 | 0.012 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.950 |
| SRR2545915 | Juvenile tuber | 2.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.110 |
| SRR5643514 | five period of Gastrodia elata | 5.440 | |
| SRR5643515 | five period of Gastrodia elata | 5.680 | |
| SRR5643524 | five period of Gastrodia elata | 5.970 | |
| SRR5643525 | five period of Gastrodia elata | 2.550 | |
| SRR5643528 | five period of Gastrodia elata | 2.180 | |
| SRR5643658 | five period of Gastrodia elata | 1.540 | |
| SRR5643659 | five period of Gastrodia elata | 6.900 | |
| SRR5643660 | five period of Gastrodia elata | 6.450 | |
| SRR5643661 | five period of Gastrodia elata | 6.770 | |
| SRR5643662 | five period of Gastrodia elata | 8.000 | |
| SRR5643663 | five period of Gastrodia elata | 4.300 | |
| SRR5643664 | five period of Gastrodia elata | 5.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.96 |
| Juven | Juvenile tuber | 3.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.15 | |
| Mother_Juven | Mother tuber of Juvenile | 2.17 |