Detail information of GWHGAAEX016117/evm.TU.scaffold_73.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|298675852|ref|YP_003727602.1| | 6.00E-62 | fibronectin-binding A domain-containing protein [Methanohalobium evestigatum Z-7303] |
| KOG | KOG2030 | 0 | Predicted RNA-binding protein |
| nr | gi|672163799|ref|XP_008801756.1| | 0 | PREDICTED: nuclear export mediator factor NEMF isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|F6H6Z8|F6H6Z8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47947.1} |
| TAIR | AT5G49930 | 0 | zinc knuckle (CCHC-type) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 640023 | 715915 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016117
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05833.10 | FbpA | 52 | 149 | 2.40E-14 |
| PF05833.10 | FbpA | 324 | 544 | 2.10E-10 |
| PF05670.12 | DUF814 | 555 | 654 | 9.40E-25 |
| PF00098.22 | zf-CCHC | 964 | 979 | 6.10E-06 |
| PF11923.7 | DUF3441 | 1029 | 1125 | 7.40E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.480 |
| SRR2545915 | Juvenile tuber | 42.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.560 |
| SRR5643514 | five period of Gastrodia elata | 21.040 | |
| SRR5643515 | five period of Gastrodia elata | 19.710 | |
| SRR5643524 | five period of Gastrodia elata | 19.700 | |
| SRR5643525 | five period of Gastrodia elata | 16.040 | |
| SRR5643528 | five period of Gastrodia elata | 12.240 | |
| SRR5643658 | five period of Gastrodia elata | 17.320 | |
| SRR5643659 | five period of Gastrodia elata | 30.810 | |
| SRR5643660 | five period of Gastrodia elata | 35.670 | |
| SRR5643661 | five period of Gastrodia elata | 30.720 | |
| SRR5643662 | five period of Gastrodia elata | 27.730 | |
| SRR5643663 | five period of Gastrodia elata | 34.400 | |
| SRR5643664 | five period of Gastrodia elata | 35.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.61 |
| Juven | Juvenile tuber | 49.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.09 | |
| Mother_Juven | Mother tuber of Juvenile | 22.19 |