Detail information of GWHGAAEX016118/evm.TU.scaffold_73.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|296243016|ref|YP_003650503.1|2.00E-111thermosome subunit [Thermosphaera aggregans DSM 11486]
KOGKOG03630Chaperonin complex component, TCP-1 beta subunit (CCT2)
nrgi|743768759|ref|XP_010914656.1|0PREDICTED: T-complex protein 1 subunit beta [Elaeis guineensis]
Swissprottr|Q940P8|TCPB_ARATH0T-complex protein 1 subunit beta {ECO:0000303|PubMed:11599560}
trEMBLtr|M0S4C1|M0S4C1_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P01800_001}
TAIRAT5G208900TCP-1/cpn60 chaperonin family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000076760856779225+
Transcript Sequence

Network for GWHGAAEX016118

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00118.23Cpn60_TCP1305189.20E-149
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006457Biological Processprotein folding
GO:0051082Molecular Functionunfolded protein binding
GO:0005524Molecular FunctionATP binding
GO:0005829Cellular Componentcytosol
GO:0005832Cellular Componentchaperonin-containing T-complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms102.290
SRR2545915Juvenile tuber116.160
SRP108465SRR5643513five period of Gastrodia elata124.160
SRR5643514five period of Gastrodia elata125.630
SRR5643515five period of Gastrodia elata113.780
SRR5643524five period of Gastrodia elata121.470
SRR5643525five period of Gastrodia elata110.630
SRR5643528five period of Gastrodia elata123.220
SRR5643658five period of Gastrodia elata100.860
SRR5643659five period of Gastrodia elata124.160
SRR5643660five period of Gastrodia elata119.800
SRR5643661five period of Gastrodia elata117.930
SRR5643662five period of Gastrodia elata108.150
SRR5643663five period of Gastrodia elata112.140
SRR5643664five period of Gastrodia elata101.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1115.200
SRR6049655Rhizomagastrodiae_C368-T10_good_1101.390
SRR6049656Rhizomagastrodiae_C368-T07_good_1123.080
SRR6049657Rhizomagastrodiae_C368-T07_good_1119.880
SRR6049658Rhizomagastrodiae_C368-T04_good_1119.840
SRR6049659Rhizomagastrodiae_C368-T04_good_1114.590
SRR6049660Rhizomagastrodiae_C368-T01_good_1122.160
SRR6049661Rhizomagastrodiae_C368-T04_good_1128.720
SRR6049662Rhizomagastrodiae_C368-T01_good_1152.130
SRR6049663Rhizomagastrodiae_C368-T01_good_1141.660
SRR6049664Rhizomagastrodiae_C368-T10_good_1139.370
SRR6049665Rhizomagastrodiae_C368-T10_good_1139.370
SRP279888GastroGastrodia elata tuber 137.15
JuvenJuvenile tuber206.47
Mother_GastroMother tuber of Gastrodia elata 108.51
Mother_JuvenMother tuber of Juvenile 140.02