Gene detail

Detail information of GWHGAAEX016124/evm.TU.scaffold_73.38

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|292491390\|ref\|YP_003526829.1\|	4.00E-140	ATP-dependent helicase HrpA [Nitrosococcus halophilus Nc 4]
KOG	KOG0925	0	mRNA splicing factor ATP-dependent RNA helicase
nr	gi\|743768694\|ref\|XP_010914623.1\|	0	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Elaeis guineensis]
Swissprot	tr\|O22899\|DHX15_ARATH	0	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|M0SE38\|M0SE38_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P12710_001}
TAIR	AT3G62310	0	RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	954441	964054	+

Transcript Sequence
>GWHTAAEX016124 TTAACACAAGCATATAAACTCAGAACCTAAGCAAAAACTAGGGTTTGGTTCTCCCTCCTCATCTCTGAAATCTAGATAAACGCACCGTCTGGCTCGCCAGGCATGTCTATGGAGAGAAAGCGCAAGGTTAGCCTTTTCGACGTTGTTGACGAGTCCGTGCTCTCGGCGAAAAAGTCTCGAATTAATGGATCGGTAACTGCACCGATCATGGCTGCGACGATCAACCGATGGACAGGTCGAACCTACTCGCAAAGATACTTCGAGATCCTGGAAAAGAGGAAGACGCTTCCCGTTTGGCAGCAAAAAGATGAGTTCCTTCAAGTTCTTCGTGACAGCCAGACCATTATTCTTGTTGGCGAAACTGGGAGCGGTAAGACCACCCAGATACCTCAATTTGTTTTGGAAGCCGACTTCTTGGGAAAACGGCCGATGGTTGCCTGCACTCAACCTCGTAGAGTGGCTGCAATGTCTGTTTCTCGTAGAGTTGCCGAGGAGATGGACGTAACTATTGGAGAAGAGGTTGGCTATAATGTTCGATTTGAAGATTGCAGCAGCCCTAAAACTATTTTGAAGTATCTAACTGATGGTATGCTTTTAAGAGAAGCAATGGCTGATCCACTTTTAGAGCGGTACAAGGTGATTGTTCTTGACGAGGCCCATGAACGCACCTTAGCAACGGATGTTCTTTTTGGCCTTCTCAAAGAGGTTGTAAGAAACAGGCCTGATTTAAAACTAGTCGTCATGAGTGCAACTCTTGAGGCTGAGAAATTCCAAGGATATTTTAATGGAGCTCCGCTAATGAAGGTTCCTGGTAGGCTGCATCCTGTAGAGATCTTTTATACGCAGGACCCGGAGAGGGATTATTTGGAAGCTGCAATAAGAACTGTAGTGCAGATACACATGTGCGAACCCCCTGGTGACATTCTTGTTTTTCTCACTGGAGAGGAGGAGATAGAGGACGCCTGTCGGAAAATTACAAAGGAAATTAATAATTTGGGCGATCAAGTTGGTCCTATTAAAACTGTCCCTCTCTATTCTACTTTACCTCCAGCAATGCAACAGAAAATTTTTGAGCCTGCCCCAGCACCTTTGAAGGATGATGGTCCACCTGGTCGGAAGATTGTTGTATCAACCAACATCGCAGAGACATCTCTGACTATTGACGGCATAGTTTATGTTATTGATCCGGGTTTCTCTAAACAGAAGGTTTACAATCCTCGAATTCGTGTGGAGTCATTGCTGGTTTCTCCGATTTCAAAAGCAAGTGCTCATCAGAGATCTGGACGTGCTGGCAGAACACAACCTGGGAAATGCTTTAGGCTATACACTGAAAAAAGTTTTAATAATGATCTACAACCGCAGACCTATCCTGAAATTCTCAGATCAAATCTGGCAAACACAGTACTTACGTTGAAGAAGCTTGGAATTGATGATCTTGTTCATTTTGATTTTATGGACCCCCCTGCGCCGGAGACCTTGATGCGTGCCTTGGAAGTTTTGAACTATTTGGGAGCTCTAGATGATGATGGAAACTTGACCAAGCTGGGTGAAATAATGAGTGAATTTCCTTTGGATCCGCAGATGTCAAAGATGCTTGTTGTTAGTCCAGAATTCAATTGTTCCAATGAAATTCTATCAGTTTCAGCAATGCTGTCAGTACCCAATTGCTTTGTGCGGCCTAGGGATGCTCAAAAAGCTGCTGATGAAGCAAAGGCTCGGTTTGGTCACATTGACGGGGATCACCTAACTCTACTAAATGTCTATCATGCTTACAAACAAAATAATGAAGATCCTTCTTGGTGTTTTGATAATTTTATAAACCAGAGAGCACTGAAGGCTGCTGACAATGTGAGGCAACAGCTAGTGCGGATTATGGCCAGATTCAATCTCAAGCTTTGCAGCACAGACTTCAACAGTCGCGATTATTACGTGAACATAAGAAAAGCATTGTTGGCTGGGTACTTTATGCAGGTAGCTCATCTTGAAAGAACTGGCCATTACCTGACAGTGAAGGATAATCAGGTGGTTCATCTTCATCCTTCAAACTGCTTGGATCACAAGCCTGAGTGGGTAATCTACAATGAATACGTCTTGACGAGCCGAAACTTTATTCGCACAGTCACTGACATCCGCGGCGAGTGGCTACTGGACATAGCGTCGCACTATTACGATCTCAGCAATTTTCCATCCTGTGAGGCCAAGCGAGTTCTGGAAAGGCTCTTCAACAAGCGCGAGAAGGACCGCCAAGATATTAATAATAATAAAAACAGGAAATTGCTCCTCTAATGAATGCTCTGTATCCCAACCTCACTGTGCTCTGCTTTATATATATATATGCTAGATTAAAGAACAAATTAAGATTTATATTTATATGATTGGGTCACATTTTTTGCTGGGTTTTTTATGGATTTATAATTAAATGCTTTGTAGAAGAATATTTGTAAATGATAACTTCATAGCTTCTTCATCATGATTGTTCATTCTAAAAGAGGTTTAAGAAAAAAATAAATAGCCATCTAAACTATCTATCTTCTAATTTGTGTCAAGATGGGAATCATGTTCTTTAGGTTAATGGAGTTTTTAGCATATTTTTTTGTTATTCTGTTCGGCAAAAATGTATTCAGATCATTTT

Network for GWHGAAEX016124

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	72	221	3.20E-06
PF00271.30	Helicase_C	265	399	4.30E-11
PF04408.22	HA2	462	550	4.50E-24
PF07717.15	OB_NTP_bind	612	688	1.40E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12820	DHX15, PRP43	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0004386	Molecular Function	helicase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	61.820
SRP064423	SRR2545915	Juvenile tuber	63.670
SRP108465	SRR5643513	five period of Gastrodia elata	55.470
	SRR5643514	five period of Gastrodia elata	49.730
	SRR5643515	five period of Gastrodia elata	50.000
	SRR5643524	five period of Gastrodia elata	51.210
	SRR5643525	five period of Gastrodia elata	34.550
	SRR5643528	five period of Gastrodia elata	38.450
	SRR5643658	five period of Gastrodia elata	32.510
	SRR5643659	five period of Gastrodia elata	73.630
	SRR5643660	five period of Gastrodia elata	75.560
	SRR5643661	five period of Gastrodia elata	77.200
	SRR5643662	five period of Gastrodia elata	72.130
	SRR5643663	five period of Gastrodia elata	77.680
	SRR5643664	five period of Gastrodia elata	67.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	65.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	58.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	68.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	77.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	87.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	67.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	74.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	67.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.700
SRP279888	Gastro	Gastrodia elata tuber	68.56
	Juven	Juvenile tuber	80.12
	Mother_Gastro	Mother tuber of Gastrodia elata	44.87
	Mother_Juven	Mother tuber of Juvenile	71.81