Detail information of GWHGAAEX016126/evm.TU.scaffold_73.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|720010432|ref|XP_010259248.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Nelumbo nucifera] |
| Swissprot | tr|O82380|PP175_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g29760, chloroplastic (Precursor) |
| trEMBL | tr|F6GUS6|F6GUS6_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB43484.1} |
| TAIR | AT2G29760 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 1023505 | 1025713 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016126
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 76 | 105 | 0.94 |
| PF01535.19 | PPR | 179 | 208 | 3.70E-08 |
| PF01535.19 | PPR | 209 | 237 | 1.20E-07 |
| PF01535.19 | PPR | 241 | 269 | 7.90E-06 |
| PF01535.19 | PPR | 271 | 300 | 1.70E-08 |
| PF01535.19 | PPR | 344 | 364 | 0.0087 |
| PF13041.5 | PPR_2 | 369 | 416 | 4.00E-10 |
| PF01535.19 | PPR | 444 | 472 | 0.2 |
| PF14432.5 | DYW_deaminase | 546 | 667 | 1.80E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.220 |
| SRR2545915 | Juvenile tuber | 2.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.360 |
| SRR5643514 | five period of Gastrodia elata | 2.100 | |
| SRR5643515 | five period of Gastrodia elata | 1.310 | |
| SRR5643524 | five period of Gastrodia elata | 1.870 | |
| SRR5643525 | five period of Gastrodia elata | 0.740 | |
| SRR5643528 | five period of Gastrodia elata | 0.780 | |
| SRR5643658 | five period of Gastrodia elata | 0.370 | |
| SRR5643659 | five period of Gastrodia elata | 2.570 | |
| SRR5643660 | five period of Gastrodia elata | 2.350 | |
| SRR5643661 | five period of Gastrodia elata | 3.200 | |
| SRR5643662 | five period of Gastrodia elata | 2.190 | |
| SRR5643663 | five period of Gastrodia elata | 1.850 | |
| SRR5643664 | five period of Gastrodia elata | 2.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.38 |
| Juven | Juvenile tuber | 2.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.06 | |
| Mother_Juven | Mother tuber of Juvenile | 0.70 |