Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|156937645\|ref\|YP_001435441.1\|	4.00E-10	DNA-directed RNA polymerase subunit M [Ignicoccus hospitalis KIN4/I]
KOG	KOG2691	2.00E-57	RNA polymerase II subunit 9
nr	gi\|573963949\|ref\|XP_006664099.1\|	1.29E-59	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9B-like [Oryza brachyantha]
Swissprot	tr\|Q6NLH0\|RPB9A_ARATH	6.00E-58	DNA-directed RNA polymerases II, IV and V subunit 9A
trEMBL	tr\|J3NE50\|J3NE50_ORYBR	5.00E-60	DNA-directed RNA polymerase subunit {ECO:0000256\|PIRNR:PIRNR005586, ECO:0000256\|RuleBase:RU004351}
TAIR	AT3G16980	2.00E-57	RNA polymerases M/15 Kd subunit

Scaffold	Start	End	Strand
GWHAAEX00000076	1061165	1063739	-

Transcript Sequence
>GWHTAAEX016131 CCTCATCGACTGAAACAAAGTTTCAGAAGCATTCATAAACAATGAGTATCATGAGATTTTGCTGTGAATGCAACAATCTTCTGTATCCAAGGGAAAACAAGGAACAGAAAATCCTCCTTTATGCTTGCAGAAACTGTGATCATGAGGAGGTAGCTGATAACTTCTGTGTCTATAGAAATGTCATAGTTCATGACATTGGGGAGCTTACACAGACCCTGCAAGATGCAACCGCTGATCCAACTCTTCCTCGCACGAGGACCGTTAGATGTGCGATGTGCGGCCACTCGGAGGTCGTGTTCCTCCAGGCCACTGCTACAAGGGGCGATGAAGGAATGACTCTGGTGTTTGTCTGTTGCAATCCTGCTTGTGATCATCGCTGGAGAGAGTGAATTGAGACAGCATATTAACGCACTAATTAGAAGTTAATATCCCTCTAATCCATCATTTTCTTATCTCATTTGTGACCATAATCTATTCATATGATTTCTTAATTATTATCAAGATTAGTGCTGATAAAATCTCTTTTATTTGTTCTCTGATTACCTATGGATACAACAAATAATGCCCAAAATGTTATAATTTATATTTGTAAATAGGAAAAGTGCG

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation
Module1

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02150.15	RNA_POL_M_15KD	4	40	4.40E-11
PF01096.17	TFIIS_C	75	114	4.40E-10

Protein Sequence

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K03017	RPB9, POLR2I	RNA polymerase	map03020

GO term	Ontology	Name
GO:0006379	Biological Process	mRNA cleavage
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.820
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	1.280
	SRR5643514	five period of Gastrodia elata	0.690
	SRR5643515	five period of Gastrodia elata	0.510
	SRR5643524	five period of Gastrodia elata	0.450
	SRR5643525	five period of Gastrodia elata	6.330
	SRR5643528	five period of Gastrodia elata	13.730
	SRR5643658	five period of Gastrodia elata	6.160
	SRR5643659	five period of Gastrodia elata	1.180
	SRR5643660	five period of Gastrodia elata	0.490
	SRR5643661	five period of Gastrodia elata	0.490
	SRR5643662	five period of Gastrodia elata	0.820
	SRR5643663	five period of Gastrodia elata	1.860
	SRR5643664	five period of Gastrodia elata	2.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.920
SRP279888	Gastro	Gastrodia elata tuber	1.80
	Juven	Juvenile tuber	0.59
	Mother_Gastro	Mother tuber of Gastrodia elata	1.91
	Mother_Juven	Mother tuber of Juvenile	0.66