Detail information of GWHGAAEX016132/evm.TU.scaffold_73.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|20807685|ref|NP_622856.1| | 7.00E-21 | thiol-disulfide isomerase [Thermoanaerobacter tengcongensis MB4] |
| KOG | KOG0191 | 0 | Thioredoxin/protein disulfide isomerase |
| nr | gi|672148478|ref|XP_008797191.1| | 0 | PREDICTED: probable protein disulfide-isomerase A6 [Phoenix dactylifera] |
| Swissprot | tr|Q75M08|PDI21_ORYSJ | 0 | Protein disulfide isomerase-like 2-1 (Precursor) |
| trEMBL | tr|M0RS28|M0RS28_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P13980_001} |
| TAIR | AT2G47470 | 0 | thioredoxin family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 1092294 | 1111881 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016132
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 26 | 129 | 5.30E-30 |
| PF00085.19 | Thioredoxin | 144 | 248 | 6.90E-32 |
| PF07749.11 | ERp29 | 265 | 359 | 1.30E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09584 | PDIA6, TXNDC7 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0016853 | Molecular Function | isomerase activity |
| GO:0005783 | Cellular Component | endoplasmic reticulum |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.480 |
| SRR2545915 | Juvenile tuber | 71.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 142.090 |
| SRR5643514 | five period of Gastrodia elata | 142.470 | |
| SRR5643515 | five period of Gastrodia elata | 136.930 | |
| SRR5643524 | five period of Gastrodia elata | 169.540 | |
| SRR5643525 | five period of Gastrodia elata | 127.170 | |
| SRR5643528 | five period of Gastrodia elata | 220.890 | |
| SRR5643658 | five period of Gastrodia elata | 117.980 | |
| SRR5643659 | five period of Gastrodia elata | 165.810 | |
| SRR5643660 | five period of Gastrodia elata | 166.790 | |
| SRR5643661 | five period of Gastrodia elata | 176.140 | |
| SRR5643662 | five period of Gastrodia elata | 134.960 | |
| SRR5643663 | five period of Gastrodia elata | 142.110 | |
| SRR5643664 | five period of Gastrodia elata | 115.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 97.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 150.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 123.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 77.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 83.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 58.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 82.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 88.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 146.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 124.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 142.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 142.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 128.82 |
| Juven | Juvenile tuber | 100.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 174.57 | |
| Mother_Juven | Mother tuber of Juvenile | 140.80 |