Detail information of GWHGAAEX016134/evm.TU.scaffold_73.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428778146|ref|YP_007169933.1| | 6.00E-106 | ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418] |
| KOG | KOG0351 | 0 | ATP-dependent DNA helicase |
| nr | gi|695078730|ref|XP_009386758.1| | 0 | PREDICTED: ATP-dependent DNA helicase Q-like 1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FT74|RQL1_ARATH | 0 | ATP-dependent DNA helicase Q-like 1 |
| trEMBL | tr|M5W242|M5W242_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ07431.1} |
| TAIR | AT3G05740 | 0 | RECQ helicase l1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 1128986 | 1170772 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016134
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 217 | 385 | 1.90E-17 |
| PF00271.30 | Helicase_C | 422 | 530 | 6.20E-16 |
| PF16124.4 | RecQ_Zn_bind | 543 | 612 | 8.90E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10901 | BLM, RECQL3, SGS1 | Homologous recombination | map03440 |
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006310 | Biological Process | DNA recombination |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.000 |
| SRR2545915 | Juvenile tuber | 2.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.280 |
| SRR5643514 | five period of Gastrodia elata | 1.470 | |
| SRR5643515 | five period of Gastrodia elata | 1.880 | |
| SRR5643524 | five period of Gastrodia elata | 1.080 | |
| SRR5643525 | five period of Gastrodia elata | 2.350 | |
| SRR5643528 | five period of Gastrodia elata | 1.470 | |
| SRR5643658 | five period of Gastrodia elata | 1.800 | |
| SRR5643659 | five period of Gastrodia elata | 1.360 | |
| SRR5643660 | five period of Gastrodia elata | 1.200 | |
| SRR5643661 | five period of Gastrodia elata | 1.220 | |
| SRR5643662 | five period of Gastrodia elata | 1.510 | |
| SRR5643663 | five period of Gastrodia elata | 1.320 | |
| SRR5643664 | five period of Gastrodia elata | 0.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.71 |
| Juven | Juvenile tuber | 2.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.20 | |
| Mother_Juven | Mother tuber of Juvenile | 3.66 |