Detail information of GWHGAAEX016139/evm.TU.scaffold_73.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16014.00E-28GATA-4/5/6 transcription factors
nrgi|672151163|ref|XP_008797400.1|4.33E-37PREDICTED: GATA transcription factor 15-like [Phoenix dactylifera]
Swissprottr|Q9FJ10|GAT16_ARATH1.00E-28GATA transcription factor 16
trEMBLtr|A2XNM3|A2XNM3_ORYSI1.00E-36Putative uncharacterized protein {ECO:0000313|EMBL:EAY92433.1}
TAIRAT5G493004.00E-28GATA transcription factor 16

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007613063731307650-
Transcript Sequence

Network for GWHGAAEX016139

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00320.26GATA34684.50E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.970
SRR2545915Juvenile tuber27.690
SRP108465SRR5643513five period of Gastrodia elata26.800
SRR5643514five period of Gastrodia elata27.810
SRR5643515five period of Gastrodia elata31.320
SRR5643524five period of Gastrodia elata30.700
SRR5643525five period of Gastrodia elata45.630
SRR5643528five period of Gastrodia elata40.070
SRR5643658five period of Gastrodia elata32.450
SRR5643659five period of Gastrodia elata48.350
SRR5643660five period of Gastrodia elata57.010
SRR5643661five period of Gastrodia elata50.250
SRR5643662five period of Gastrodia elata52.210
SRR5643663five period of Gastrodia elata48.800
SRR5643664five period of Gastrodia elata33.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.880
SRR6049655Rhizomagastrodiae_C368-T10_good_130.790
SRR6049656Rhizomagastrodiae_C368-T07_good_125.740
SRR6049657Rhizomagastrodiae_C368-T07_good_122.910
SRR6049658Rhizomagastrodiae_C368-T04_good_122.140
SRR6049659Rhizomagastrodiae_C368-T04_good_117.270
SRR6049660Rhizomagastrodiae_C368-T01_good_119.020
SRR6049661Rhizomagastrodiae_C368-T04_good_120.800
SRR6049662Rhizomagastrodiae_C368-T01_good_130.550
SRR6049663Rhizomagastrodiae_C368-T01_good_124.060
SRR6049664Rhizomagastrodiae_C368-T10_good_125.080
SRR6049665Rhizomagastrodiae_C368-T10_good_125.080
SRP279888GastroGastrodia elata tuber 51.18
JuvenJuvenile tuber19.96
Mother_GastroMother tuber of Gastrodia elata 26.09
Mother_JuvenMother tuber of Juvenile 22.33