Detail information of GWHGAAEX016151/evm.TU.scaffold_73.69
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672134775|ref|XP_008791039.1| | 0 | PREDICTED: auxin response factor 23-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q94JM3|ARFB_ARATH | 0 | Auxin response factor 2 |
| trEMBL | tr|M0T558|M0T558_MUSAM | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
| TAIR | AT5G62000 | 0 | auxin response factor 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 1791507 | 1795882 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016151
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02362.20 | B3 | 161 | 262 | 4.20E-21 |
| PF06507.12 | Auxin_resp | 287 | 369 | 6.80E-37 |
| PF02309.15 | AUX_IAA | 717 | 805 | 1.60E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3-ARF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009725 | Biological Process | response to hormone |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 86.760 |
| SRR2545915 | Juvenile tuber | 108.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.610 |
| SRR5643514 | five period of Gastrodia elata | 64.180 | |
| SRR5643515 | five period of Gastrodia elata | 62.660 | |
| SRR5643524 | five period of Gastrodia elata | 63.010 | |
| SRR5643525 | five period of Gastrodia elata | 38.260 | |
| SRR5643528 | five period of Gastrodia elata | 24.260 | |
| SRR5643658 | five period of Gastrodia elata | 60.080 | |
| SRR5643659 | five period of Gastrodia elata | 70.220 | |
| SRR5643660 | five period of Gastrodia elata | 82.910 | |
| SRR5643661 | five period of Gastrodia elata | 63.200 | |
| SRR5643662 | five period of Gastrodia elata | 93.700 | |
| SRR5643663 | five period of Gastrodia elata | 68.750 | |
| SRR5643664 | five period of Gastrodia elata | 100.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 71.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 64.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 74.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 78.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 84.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 72.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 79.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 55.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 59.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 61.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 61.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 91.40 |
| Juven | Juvenile tuber | 69.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.29 | |
| Mother_Juven | Mother tuber of Juvenile | 62.40 |