Detail information of GWHGAAEX016160/evm.TU.scaffold_73.79
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695035389|ref|XP_009405112.1| | 1.42E-69 | PREDICTED: ethylene-responsive transcription factor ERF114-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FH54|EF114_ARATH | 6.00E-44 | Ethylene-responsive transcription factor ERF114 |
| trEMBL | tr|M0T563|M0T563_MUSAM | 1.00E-66 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P08140_001} |
| TAIR | AT5G61890 | 2.00E-43 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 1959190 | 1961263 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016160
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 78 | 127 | 1.00E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.570 |
| SRR2545915 | Juvenile tuber | 4.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.510 |
| SRR5643514 | five period of Gastrodia elata | 7.680 | |
| SRR5643515 | five period of Gastrodia elata | 10.230 | |
| SRR5643524 | five period of Gastrodia elata | 13.890 | |
| SRR5643525 | five period of Gastrodia elata | 14.610 | |
| SRR5643528 | five period of Gastrodia elata | 32.840 | |
| SRR5643658 | five period of Gastrodia elata | 16.170 | |
| SRR5643659 | five period of Gastrodia elata | 14.230 | |
| SRR5643660 | five period of Gastrodia elata | 6.560 | |
| SRR5643661 | five period of Gastrodia elata | 10.650 | |
| SRR5643662 | five period of Gastrodia elata | 7.320 | |
| SRR5643663 | five period of Gastrodia elata | 4.680 | |
| SRR5643664 | five period of Gastrodia elata | 4.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.98 |
| Juven | Juvenile tuber | 9.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.81 | |
| Mother_Juven | Mother tuber of Juvenile | 48.92 |