Gene detail

Detail information of GWHGAAEX016165/evm.TU.scaffold_73.84

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|242948844\|gb\|ACS94257.1\|	0	LEAFY protein [Phalaenopsis hybrid cultivar]
Swissprot	tr\|O04064\|FLLH_POPTR	1.00E-144	Floricaula/leafy homolog
trEMBL	tr\|E3P7J2\|E3P7J2_9ASPA	0	LEAFY protein {ECO:0000313\|EMBL:ACS94257.1}
TAIR	AT5G61850	1.00E-133	floral meristem identity control protein LEAFY (LFY)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	2027494	2029339	+

Transcript Sequence
>GWHTAAEX016165 ATGGACCCCGGCGAGGGCTTCTCTGGCGGCATGTTCCGGTGGGACCCGCGCGCCGCAGCGCCGGCAGGCTCTGTTCAGCCGTATATCGCCTCATCGATCTCCCACATGGCGGCGCCTGAGGCCACGCCGCCGGCTCTGAGCGGAGGAGAAACCGCGCGGGCGGCGGTGCGGGAGCTGGAAGACGTGTTCGTAGGGTACGGAGTACGGTACGCGACGGTCGCACGGATGGGGGATTTGGGGTTCACGGCGAGCACTCTTGCGGGAATGAGGGAGGAAGAGGTGGACGATATGATGGCCACGCTCTCCCATCTCTTCCGCTGGGATCTTCTTGTTGGCGAGCGTTACGGCATCAAAGCCGCCATCAGGGCTGAGCGCCGCCGCATTGAATCACTCGTCTTTCCTCCTCCGCCGCAGCCGCCTCCGACGGGTGGGCTCAACCTCGCTCATAATCAGCACCATGCGGAGACTATCCATTTTGACGATCCGCGGAGCGCCAGATCCAGGCTCCTGCTTCTCTCGCCCGATCACCACACCGCCCTCGACGCACTTTCCCAAGAAGGAAGGTTGTCGGAGGAGGCGGTGCAGCTTGAAAGAGAAGCGGCGGGAAGCGGCGGGGAGGCGGGCGGCGAGTATCAGGGAAGGGCAAAGAGTGCGCAGCAGCAACAGCAGCAGCGGAGTAAAAAAAAGGGGGATAAGAAGAGGAAGAAGAAGAAGAAGGGGGTGATGGACGTAGAGGAGGATGAAGAGGAGGTGCGTATTGGAGAAGAAGAGGAGGGAGAAGACGATGCAGCGGAGTCAGAGTCCGAGAGGTGCGGCGCCGGCGCAGGCGGGGAAAGGCAGAGAGAGCACCCTTTCATAGTGACAGAGCCCGGAGAGGTGGCACGTGCGAAGAAGAACGGCCTCGATTATCTCTTCCATCTCTACCAGCAGTGCCACCAGTTTCTGCTCCAGGTCCAGGCCGTCGCCAAGGACCGAGGCGACAAGTGCCCCACCAAGGTGACGAACCTGGTGTTCAGGTACGCGAAGAGGGTGGGGGCGAGCTACATAAACAAGCCGAAGATGAGGCACTACGTGCACTGTTACGCGCTCCACGTGCTGGACGAGGAGGGCTCCAACGCCCTCCGGCGGGCCTTTAAGGAGCGCGGGGAGAACGTCGGCGCCTGGCGCCTGGCCTGCTACAAGCCACTTGTCGCCATCTCGGCCTCCCACGACTTCGACGTCGACGCCGTCTTCAACGCCCATCCCCGCCTCTCCATATGGTACGTTCCCACCAAGCTCCGCCAGCTGTGCCATCTCGCACGTGCCGCCGCCTCCTCCTCCTCCAATTCCTCCCCCGTCGTCACCGACGCCGCCGACGTCGTCCACCTCTTCGCCGCCGCCGACCCTCTCCGCAGATCACCTCACGATCACTCCCCCGCCTTCCCCTGGGCTGCCTCAACTTGA

Network for GWHGAAEX016165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01698.15	LFY_SAM	56	129	4.50E-38
PF17538.1	C_LFY_FLO	274	437	4.50E-97

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LFY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.080
SRP064423	SRR2545915	Juvenile tuber	1.370
SRP108465	SRR5643513	five period of Gastrodia elata	11.070
	SRR5643514	five period of Gastrodia elata	4.240
	SRR5643515	five period of Gastrodia elata	8.500
	SRR5643524	five period of Gastrodia elata	4.040
	SRR5643525	five period of Gastrodia elata	16.680
	SRR5643528	five period of Gastrodia elata	11.000
	SRR5643658	five period of Gastrodia elata	7.370
	SRR5643659	five period of Gastrodia elata	4.600
	SRR5643660	five period of Gastrodia elata	5.980
	SRR5643661	five period of Gastrodia elata	6.090
	SRR5643662	five period of Gastrodia elata	6.540
	SRR5643663	five period of Gastrodia elata	2.660
	SRR5643664	five period of Gastrodia elata	12.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.440
SRP279888	Gastro	Gastrodia elata tuber	6.16
	Juven	Juvenile tuber	5.90
	Mother_Gastro	Mother tuber of Gastrodia elata	13.36
	Mother_Juven	Mother tuber of Juvenile	6.40