Detail information of GWHGAAEX016168/evm.TU.scaffold_73.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|152991833|ref|YP_001357554.1| | 1.00E-45 | histidine biosynthesis bifunctional protein HisI [Sulfurovum sp. NBC37-1] |
| KOG | KOG4311 | 1.00E-115 | Histidinol dehydrogenase |
| nr | gi|695034485|ref|XP_009404731.1| | 2.33E-124 | PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O82768|HIS2_ARATH | 3.00E-116 | Phosphoribosyl-ATP pyrophosphatase (Precursor) |
| trEMBL | tr|M0T7I4|M0T7I4_MUSAM | 9.00E-125 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P16360_001} |
| TAIR | AT1G31860 | 1.00E-115 | histidine biosynthesis bifunctional protein (HISIE) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 2075178 | 2086819 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016168
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01502.17 | PRA-CH | 85 | 158 | 3.10E-27 |
| PF01503.16 | PRA-PH | 196 | 267 | 1.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11755 | hisIE | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of amino acids | map01230 | ||
| Histidine metabolism | map00340 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000105 | Biological Process | histidine biosynthetic process |
| GO:0004636 | Molecular Function | phosphoribosyl-ATP diphosphatase activity |
| GO:0004635 | Molecular Function | phosphoribosyl-AMP cyclohydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 53.340 |
| SRR2545915 | Juvenile tuber | 68.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 77.420 |
| SRR5643514 | five period of Gastrodia elata | 85.660 | |
| SRR5643515 | five period of Gastrodia elata | 68.580 | |
| SRR5643524 | five period of Gastrodia elata | 86.520 | |
| SRR5643525 | five period of Gastrodia elata | 90.810 | |
| SRR5643528 | five period of Gastrodia elata | 93.840 | |
| SRR5643658 | five period of Gastrodia elata | 118.210 | |
| SRR5643659 | five period of Gastrodia elata | 71.750 | |
| SRR5643660 | five period of Gastrodia elata | 66.380 | |
| SRR5643661 | five period of Gastrodia elata | 66.600 | |
| SRR5643662 | five period of Gastrodia elata | 74.540 | |
| SRR5643663 | five period of Gastrodia elata | 82.760 | |
| SRR5643664 | five period of Gastrodia elata | 76.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 81.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 69.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 77.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 80.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 92.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 88.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 78.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 78.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 65.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 80.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 90.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 90.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 96.57 |
| Juven | Juvenile tuber | 57.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 64.27 | |
| Mother_Juven | Mother tuber of Juvenile | 47.53 |