Detail information of GWHGAAEX016169/evm.TU.scaffold_73.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG44001.00E-23E3 ubiquitin ligase interacting with arginine methyltransferase
nrgi|695066492|ref|XP_009380138.1|6.02E-46PREDICTED: uncharacterized protein LOC103968599 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9ZS96|Y4478_ARATH2.00E-06Uncharacterized protein At4g04775
trEMBLtr|A0A067E4X6|A0A067E4X6_CITSI2.00E-30Uncharacterized protein {ECO:0000313|EMBL:KDO45961.1}
TAIRAT3G428601.00E-23zinc knuckle (CCHC-type) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007621182182165088+
Transcript Sequence

Network for GWHGAAEX016169

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06839.11zf-GRF46888.10E-15
PF06839.11zf-GRF1381823.00E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.570
SRR2545915Juvenile tuber5.580
SRP108465SRR5643513five period of Gastrodia elata3.060
SRR5643514five period of Gastrodia elata2.980
SRR5643515five period of Gastrodia elata3.000
SRR5643524five period of Gastrodia elata2.980
SRR5643525five period of Gastrodia elata4.960
SRR5643528five period of Gastrodia elata4.870
SRR5643658five period of Gastrodia elata4.370
SRR5643659five period of Gastrodia elata3.250
SRR5643660five period of Gastrodia elata2.450
SRR5643661five period of Gastrodia elata1.660
SRR5643662five period of Gastrodia elata1.710
SRR5643663five period of Gastrodia elata3.650
SRR5643664five period of Gastrodia elata2.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.650
SRR6049655Rhizomagastrodiae_C368-T10_good_11.940
SRR6049656Rhizomagastrodiae_C368-T07_good_18.200
SRR6049657Rhizomagastrodiae_C368-T07_good_15.190
SRR6049658Rhizomagastrodiae_C368-T04_good_19.270
SRR6049659Rhizomagastrodiae_C368-T04_good_17.770
SRR6049660Rhizomagastrodiae_C368-T01_good_17.970
SRR6049661Rhizomagastrodiae_C368-T04_good_15.320
SRR6049662Rhizomagastrodiae_C368-T01_good_17.710
SRR6049663Rhizomagastrodiae_C368-T01_good_19.050
SRR6049664Rhizomagastrodiae_C368-T10_good_15.070
SRR6049665Rhizomagastrodiae_C368-T10_good_15.070
SRP279888GastroGastrodia elata tuber 3.90
JuvenJuvenile tuber2.37
Mother_GastroMother tuber of Gastrodia elata 4.18
Mother_JuvenMother tuber of Juvenile 2.74