Detail information of GWHGAAEX016170/evm.TU.scaffold_73.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|331698849|ref|YP_004335088.1| | 1.00E-35 | succinyl-diaminopimelate desuccinylase [Pseudonocardia dioxanivorans CB1190] |
| KOG | KOG2275 | 0 | Aminoacylase ACY1 and related metalloexopeptidases |
| nr | gi|672127159|ref|XP_008787043.1| | 0 | PREDICTED: aminoacylase-1 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|F6I0Q2|F6I0Q2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60518.1} |
| TAIR | AT4G38220 | 0 | Peptidase M20/M25/M40 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 2159006 | 2181941 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016170
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01546.27 | Peptidase_M20 | 97 | 432 | 2.50E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0006520 | Biological Process | cellular amino acid metabolic process |
| GO:0008237 | Molecular Function | metallopeptidase activity |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0004046 | Molecular Function | aminoacylase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 52.250 |
| SRR2545915 | Juvenile tuber | 71.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 113.420 |
| SRR5643514 | five period of Gastrodia elata | 113.870 | |
| SRR5643515 | five period of Gastrodia elata | 105.330 | |
| SRR5643524 | five period of Gastrodia elata | 122.170 | |
| SRR5643525 | five period of Gastrodia elata | 112.850 | |
| SRR5643528 | five period of Gastrodia elata | 114.150 | |
| SRR5643658 | five period of Gastrodia elata | 102.820 | |
| SRR5643659 | five period of Gastrodia elata | 106.320 | |
| SRR5643660 | five period of Gastrodia elata | 116.640 | |
| SRR5643661 | five period of Gastrodia elata | 115.900 | |
| SRR5643662 | five period of Gastrodia elata | 100.850 | |
| SRR5643663 | five period of Gastrodia elata | 100.840 | |
| SRR5643664 | five period of Gastrodia elata | 109.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 107.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 138.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 105.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 96.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 85.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 85.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 94.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 94.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 98.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 99.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 118.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 118.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 97.10 |
| Juven | Juvenile tuber | 97.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 60.96 | |
| Mother_Juven | Mother tuber of Juvenile | 86.31 |