Detail information of GWHGAAEX016180/evm.TU.scaffold_73.101


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297616212|ref|YP_003710351.1|3.00E-10DNA-directed RNA polymerase subunit H [Methanocella arvoryzae MRE50]
KOGKOG32184.00E-70RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)
nrgi|695059573|ref|XP_009418150.1|3.54E-91PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9M1J2|RPE5A_ARATH1.00E-70DNA-directed RNA polymerase V subunit 5A
trEMBLtr|K3ZJP0|K3ZJP0_SETIT4.00E-85Uncharacterized protein {ECO:0000313|EnsemblPlants:Si026794m}
TAIRAT3G570804.00E-70Eukaryotic rpb5 RNA polymerase subunit family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007622988982323431-
Transcript Sequence

Network for GWHGAAEX016180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03871.13RNA_pol_Rpb5_N191012.00E-21
PF01191.18RNA_pol_Rpb5_C1442161.10E-28
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03013RPB5, POLR2E RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006351Biological Processtranscription, DNA-templated
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms65.330
SRR2545915Juvenile tuber57.750
SRP108465SRR5643513five period of Gastrodia elata45.920
SRR5643514five period of Gastrodia elata44.230
SRR5643515five period of Gastrodia elata44.650
SRR5643524five period of Gastrodia elata44.440
SRR5643525five period of Gastrodia elata34.110
SRR5643528five period of Gastrodia elata26.360
SRR5643658five period of Gastrodia elata37.430
SRR5643659five period of Gastrodia elata44.370
SRR5643660five period of Gastrodia elata48.220
SRR5643661five period of Gastrodia elata41.520
SRR5643662five period of Gastrodia elata49.460
SRR5643663five period of Gastrodia elata46.150
SRR5643664five period of Gastrodia elata57.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_157.470
SRR6049655Rhizomagastrodiae_C368-T10_good_148.580
SRR6049656Rhizomagastrodiae_C368-T07_good_144.920
SRR6049657Rhizomagastrodiae_C368-T07_good_160.690
SRR6049658Rhizomagastrodiae_C368-T04_good_150.370
SRR6049659Rhizomagastrodiae_C368-T04_good_158.830
SRR6049660Rhizomagastrodiae_C368-T01_good_149.180
SRR6049661Rhizomagastrodiae_C368-T04_good_146.430
SRR6049662Rhizomagastrodiae_C368-T01_good_139.850
SRR6049663Rhizomagastrodiae_C368-T01_good_144.520
SRR6049664Rhizomagastrodiae_C368-T10_good_149.910
SRR6049665Rhizomagastrodiae_C368-T10_good_149.910
SRP279888GastroGastrodia elata tuber 59.29
JuvenJuvenile tuber55.11
Mother_GastroMother tuber of Gastrodia elata 35.71
Mother_JuvenMother tuber of Juvenile 40.09