Gene detail

Detail information of GWHGAAEX016181/evm.TU.scaffold_73.102

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1100	6.00E-39	Predicted E3 ubiquitin ligase
nr	gi\|743858268\|ref\|XP_010942313.1\|	6.76E-89	PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9LDD1\|BRG3_ARATH	7.00E-35	Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBL	tr\|M0S9X4\|M0S9X4_MUSAM	5.00E-80	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P21330_001}
TAIR	AT1G60610	6.00E-39	SBP (S-ribonuclease binding protein) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	2349383	2351934	+

Transcript Sequence
>GWHTAAEX016181 ATATCCACCTCACGCCAACCGTTCCACGGTTGCATCGAGTCCATTATCTCTTTATTGTCGTATTCCTCTTTTTTCTTCAGAGAACTTTCCCGTCTTCTATAAGTACAACCCCCTCCATCCCCTACCACGCCATTTCGCCCATTCCCTTCCTCTTGAAATTTCTTCGTCAATCCGAACAACTGCTGCGGCCGATTTCCTGTGCCCCATCCATCCATCACACGATTTTACGGCAATACCCTGTTAAGAATGGTGGTGCAAGCTCAGCCCTCATCCATCCCCTTCGTTCCTGATTTCTCATTCGGGCAGCCCGGAATCGTGATGATGAAGAGCCATCATCATCAGATTGGCAACCCTATCTCTTCTTACGGAAAAGCGGATTTCATCGGTGATCCGGGGATGCAGGCTACCGGCTTACCCAACGCCAGCACGGTACTGAGCGATATTAACCCCCAGAGCGAACTCACATGTAATGTCTCCGGGTCACGGAAGAGGAGCCGTGAAGACCAGCTCTCGACCTCTGCTGCGCTAATGAATGTTGTCCTTTCTCCTATACATGTACCAGATTCGTCCTTAGTGCCTGCGCCATTCGCTTTGAAGAATGGCTTTCACGGTGCTGCTACCTCTGCTTTACCGCCCCTGTTCGGCGATCCGAGCTTGCGAGTGTTCGATTCTGCATCTGCTTCCACCAGCGGCCGGCAGACCAACGCTGCTGTTCAGACCGCCTCCATTCCGCTGGGACAGGAAATTCTTGCTCAAATCTGCCATCACAATTTCGAGATGGACGCGTTAATCCGTTTCCAGAACGAGAGAATTCGTCTGGCAATGGAGGAAGTCCGCAAAAGGCACTGCAAATCCCTCATCTCCTTCCTGGAGCATCGCGTGGTGAAGCGCCTTCAGGATAAGGAGGCTGAGCTGGAGGCCGCATTCCGAAAGAATGCTGAACTCGAAGACAAAATACGTCAGATCAGTGCCGATAATCAGATCTGGTTCAATCTCGCTAGGAACAACGAAGCATTGGTCTCTAATCTCAGAACAAATCTTGAACAAGTACTTCTGCAGAGCTCCGCCCCTGCAGTTCACCCGTTATTTGCGGAAGGCTACGGGGATAGCGATGGAACGCCCTTCGCGATCGACGATGCCCAGTCTTTCTGCGTTGATGAGGAGGCTTGCAAAGCCGGGGTCGATTTTCCGTCGAACCCCGCAAATCTGCAACGGATGAACTGCAAGGTATGCGGCATTCATGATGCGTGCGTGTTGATTCTTCCTTGCCGGCATCTCTGCCTGTGCAAGGATTGCGAAACGTCGATCAGCGTTTGTCCAATCTGCAACTACCCCAAGAACGCGTGCCTGCGAGTGTTCATGTCGTGATTCTGCCAATGGAAGTATTGATATGTCTGTTGTTATTATAATTATTGACGAGTTCTGATATGTATGTAATTTTTGTTAATTTTAATTTGCAGTGTCGTTGATATTGTTTGTAGGGTATAGATGATTATAATATTTTGTTTTATTTTCTATTTTAATGTATTGGATCTATCGTAAAGCATGGAATAGAGCCCCCCCAATTATACGGTTTTTATTTTTCTGCCCTTTGGGGAAGAAAAATGGAGGTGAGGCAGTCGGCTCCGTTCGTTCAAAGCAAGTAAAACGGCGTTACAGCACGATTTTCCCGGGATATCCGTACAGATTTTGTCGGGTTGCTATCATTTAATATCTTTTAGCGGGTGATTGATATGGGTGACGAATAAAGCTACGGTAAATGTGCTTATTTATGCTTTAATCCTTCCCACGTTTTCCGATGAATTTCATTAGAGGAACGGATGCCTTTGCATTCGGACGAAAGCCCTAATAAATAATAATGTCATGGAGGTTTCCTTTCCCTACTAAGCTTTTACTAAATTGCTTTCGAGCATTCACCTCCTGGGTTGTTGCTCCCATAGAATAGGTTATATGGTTGCTCACTTTTTCTTTGCTTAGAAATGTTGATTGCAGGGCCACTCATATGTTGCTCTATTACAATTATGTAACACTAAAGAAGCAAAATCACCCAAATGAGGCTCTCAGCAGCAAGTGTTTTTGTTTAGCAGTTAAGTTTTTGAATGTGGCTCAGAAATTTTGATGTTTGGGATTGTTTATGATTACCAAAGTAGCAGCAGCACTTGCTAATTTTTTTATTAAACACTCATTAACAAAGCCCTTGTGAATTTTAGCACAAAATCTTGCTTGTCTTGAAACCATTTCATTCGCAAGGATGTTAGATTCTCTTCCTCTA

Network for GWHGAAEX016181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.130
SRP064423	SRR2545915	Juvenile tuber	17.580
SRP108465	SRR5643513	five period of Gastrodia elata	8.470
	SRR5643514	five period of Gastrodia elata	8.410
	SRR5643515	five period of Gastrodia elata	32.430
	SRR5643524	five period of Gastrodia elata	8.660
	SRR5643525	five period of Gastrodia elata	21.390
	SRR5643528	five period of Gastrodia elata	43.330
	SRR5643658	five period of Gastrodia elata	19.550
	SRR5643659	five period of Gastrodia elata	19.560
	SRR5643660	five period of Gastrodia elata	4.690
	SRR5643661	five period of Gastrodia elata	13.400
	SRR5643662	five period of Gastrodia elata	23.580
	SRR5643663	five period of Gastrodia elata	19.380
	SRR5643664	five period of Gastrodia elata	48.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	68.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	84.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.850
SRP279888	Gastro	Gastrodia elata tuber	13.12
	Juven	Juvenile tuber	1.65
	Mother_Gastro	Mother tuber of Gastrodia elata	87.94
	Mother_Juven	Mother tuber of Juvenile	18.29