Gene detail

Detail information of GWHGAAEX016182/evm.TU.scaffold_73.103

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695033431\|ref\|XP_009404204.1\|	0	PREDICTED: UPF0481 protein At3g47200-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SD53\|Y3720_ARATH	7.00E-50	UPF0481 protein At3g47200
trEMBL	tr\|K7UMH0\|K7UMH0_MAIZE	2.00E-170	Uncharacterized protein {ECO:0000313\|EMBL:AFW64916.1, ECO:0000313\|EnsemblPlants:GRMZM2G067943_P01}
TAIR	AT3G50150	2.00E-92	Plant protein of unknown function (DUF247)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	2364433	2369185	+

Transcript Sequence
>GWHTAAEX016182 CCCTTCCTCTCCTCCTACCTCTTCCTTCCATTGCCGCTGACCACCACCATAGAAGCCGCCTCCACTTTCCTTGACCCCACTCCGGCCCCCTCCGGCCGCCGATTGCCCAAACCCAATATGAGTTCCGACGAAGGCTTGCTCGTAGCACCTTCCGCAACCTCAGTTAAGACAACAATAACCACAATACCACTAGACAATAAAACAGACCAACAGTTGTAGGTAGTATTGCTTGCCCTTACAAATCAACGAAAAATATTTACCTTCTTACTCGTGCCAAAACCCCCACAAGGGCAAAGGCTTAGGATAGATGACGCTTTACAGGCCATTCTAAAATTAAATCCTCCAACATTCAACGGCTCAGCCCGATCCATAGAAGCTGAGACTTGAATTAAAGCTGTTGAAAGCAAATTGAACAGTTTGAAGTATCCTACAGTTGAAACAGTCATACTAGCAAAGTATCTATTAGAAGGAGAAGTCCATAGATTGTGTAAAATCACCTATGAAGGAGAATACTCTTTGGAGAGCGAATATTGGTGGCAATTTATTTGATTTGAACTGAGGAATAAAAACTTTCGCTGCACCCAAAATATTTGGTTAGGGCTAAAAGCTTGCGCAGCCCCAAAAATACCTATCCCCCAGGCTACTCTTCCAGCCCAAAGTGATAGCAAAAGGCTGCCATTCATTAAATAAAGGAGAGACGGCAGCAGCGGGCATGGAAAGCTTTCGATGGAGCGCAGAAGCTGGGTGAGAGGGATCGAGGAAGAGGCCCAGAGCGCGGAGGCGTCGAAGGAGTTGGAGCAATGGAGGAAGCAGAGCATCTACCGCGTGCCCTTGTGCGTCAGGGAGCTGAACCCCAAAGCCTACCGCCCTCAGCTGGTCTCCTTCGGTCCTTACCACCACGGCAACGAGGCCCTCGCCCCCATGGAGCAGCACAAGCGCCGCGCCCTCCTCTACCTCCTGCGCCGCTCCAAGAAGCCGCTTTCCGACTTTGTACTCGCCGTGGAGGAGGTTCTCCCCGAGCTGCAGAGCTGCTATGAGGGCCTCTCCGAGGCCCCCCTGGAGGATTTCCTCCGCCTCATCGTCGTCGATGCCTGCTTTATGCTCGAGATCCTCTCCTTCAATGCCGGCAGGACGGTCCTTACGGACTACCATCCCGACGATCCCGTCTTCAGCGCCCACGGCACCGTCCACATCTTTCCTTTCATCAAGAGGGACATGCTTCTCCTTGAGAATCAGCTCCCCCTGATCGCCCTCTTCAAGCTCCTCTCCGTGCAGACCGCCAAGCCTGCGAACCCTGACGATATAAACTTTCTGGTTCTGAAGCTTTGCTCGCCGGATTCCGCCACTCCAGCAAAGGGCATCGAGCTGGGGCTGCACCCGCTGGACGTGTACCGGCGGCGCCTGCTTCAGGGGCAGCTCCCACTTCAGGGGCGGCGCCAGGCGGAGCTGAAGCTGCGAATGGAGCCTGCTGCTGGAGAGATAATGCGGTCGGCAGTGGAGCTCTACGAGGCGGGGATAAGGTTCAAGAGGAGCAGCGCGGGAAGCCTGGTGGACGTGGAGTTCAGGCACGGAGTGCTGAGCCTGCGGGGGGTGGTGGTGGACGACACGACACAATATATATACCTGAACCTGATGGCCTTCGAGCGGCTGCACGTGGGGGCGGGAAGCGAGGTGACGTCATACGTCTTCTTCATGGACAGCATCATCGACTCGGCGAAGGACGTCAGCCTGCTGCACTCGAAGGGGATCATACAGAACGCGCTGGGGAGCGACAAGGCAGTCGCCAAGCTCTTCAACTCCCTCACCAACGACGTCACGCTCGAACAGGACAGCGCCCTCGACGAGGTCCAGAGAAGGGTCAACAAGTACTGCAGCAAGAGGTTGAACTTGTGGCGGGCTAATCTCATCCACACGTATTTCAGGAGCCCCTGGGCCGTCCTCTCTCTCGCCGCCGCCCTTTTCCTCCTCGCCCTCTCCGTCGTTCAGACCCTCTACAGCGTCCTCCCTTTTTACCACAACCGTTGATCCCCGCCCGCCAAGCTTTCGGATAATATGCTGATTCGCCTTCCTTTGCCTTTTGCGAAACCTGCTGTTCTATATATACTCTTTTTGCCAGTTTGTATTTGGGTTATTGATTGGTTTGCTGCTTTGGAATTTGATTTGTTTGTGTTTGATTTGACATTATTTCCGACCCATGCATGAAATAAAAAAAAG

Network for GWHGAAEX016182

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03140.14	DUF247	31	416	5.20E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.640
SRP064423	SRR2545915	Juvenile tuber	0.960
SRP108465	SRR5643513	five period of Gastrodia elata	3.970
	SRR5643514	five period of Gastrodia elata	5.110
	SRR5643515	five period of Gastrodia elata	3.510
	SRR5643524	five period of Gastrodia elata	3.710
	SRR5643525	five period of Gastrodia elata	2.150
	SRR5643528	five period of Gastrodia elata	0.600
	SRR5643658	five period of Gastrodia elata	0.640
	SRR5643659	five period of Gastrodia elata	4.810
	SRR5643660	five period of Gastrodia elata	3.320
	SRR5643661	five period of Gastrodia elata	3.570
	SRR5643662	five period of Gastrodia elata	5.340
	SRR5643663	five period of Gastrodia elata	2.830
	SRR5643664	five period of Gastrodia elata	4.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.130
SRP279888	Gastro	Gastrodia elata tuber	4.30
	Juven	Juvenile tuber	6.47
	Mother_Gastro	Mother tuber of Gastrodia elata	36.48
	Mother_Juven	Mother tuber of Juvenile	16.89