Gene detail

Detail information of GWHGAAEX016183/evm.TU.scaffold_73.104

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695034681\|ref\|XP_009404802.1\|	7.31E-145	PREDICTED: F-box protein PP2-A15 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LF92\|P2A15_ARATH	1.00E-129	F-box protein PP2-A15
trEMBL	tr\|M0T7Q9\|M0T7Q9_MUSAM	3.00E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P17110_001}
TAIR	AT3G53000	3.00E-129	phloem protein 2-A15

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	2382246	2387124	-

Transcript Sequence
>GWHTAAEX016183 GGGAATTGAAGAAAGAAAGATAGTTTTGCTTTATTATTGGCGCTCTCCTAATTCTGTTGACCTTACAGCACAATTGAGAATCCACAAGCCCGGCGCTCCGCACCCGCCGAAGCCACCGAACGTCGCACGCCGACACTATAAAAGGACCTCCCATGAGGTCGATTAGCAGAGGACAGAAAAGTCTGCTCGGAAAATTCAGGAAGAAAACCCTAGCGCAAGAGGTTCAGGGGAAGCCGAGAAAGAGGAGCGGAGAGGAGTGTCTATGGGCGCTACTATTTCTAACCTTCCTGAGACCGGCAATGCCGGAGACGGAGGTCCGGGCCTCGGAGACATACCGGAGAACTGCGTGGCGTGCGTATTCATGCACATCTCGCCCGCTGAGATCTGCAATCTCGCTCGCCTCAACCGAGCTTTTCGCGGTGCAGCTTCTGCCGATCCCGTGTGGGAATCAAAGCTTCCGGGAAATTACCCGTCCATACTCGAATTTCTGCCTTCTGAGAATTTCCAGAACATTTCCAAGAAGAAGGACGTATTCGCAATCCTCTCTCGTTCCGTCTTCTTTGATGACGGCAAGAAGGCGGTATGGCTGAATCGGAATACCGGTGGGGTCTGCGTTTCCGTGTCTGCCAAGGCGATGAATATAACGGGAATAGATGATCGGAGGCATTGGAGCTGGATTGAAACTGAAGAATCCAGGTTTCAGGTGGTGGCATACCTGCAGCAGATGTGGTGGTTCGAGGCAAACGGATCGGTGAGGTTCCCATTGCCGGCAGGAACGTACAATCTGTCGTTCAGGGTGCACCTGGGAAGATTCTACAAGAGGCTGGGGCGGCGAGCCTCCAGCTACGTGCACACCCACGGGTGGGAGGTCAAGCCCACCCGATTCGAGATTTCCGTCTCCGACGGGCAGCAGATTTCCAGGGAGTGCTTTCTGGACGATTACGATAGAGACGACTCGAATTGGAACAGCAAGCGCGGCGCTTGGATCGACTATCACGTCGGGGACTTTTTCGTCCAAGGCCCCCCGGAGATGGTCGAGGTCAGGTTTTCCATGAAGCAGATTGACGTCACCCACTCCAAGGGCGGCCTCTGCCTCGACTCCGTCTCCATCACCCCCGCCGACTGAGCCCCCTCTGCCTGATGAATATGTCAGGTAGGTATTATTTTTCTCTCTTTTTCCGCCTCGCATAGCCGGACTTGACAGACGGTTATGATGATCCATCGATCACATTTCGTTGATTCTTTCTTCTTTATTCTTAGCTTTGCTTACTTGAGATTTTGAGCCCTGCTTTCCGATGATATAATTCATTCAGCATTAAAAAGTTTAAAGTACCATTTTCCTTAAAATAACTAAGCAAAAATATTTTGGTGTCCCATTCGATAAAGATTTATTGATTAAAAGAGATTTAAAAATTAAAGAATTTTAGATAGAAAAGTTAATGTAATTTTGTAAGTGTATTACTTTTAGGATGATTTAAGGCATATTAATGTATAAAGTGTTGTGCTACTCTACCCTCGATTTCATCTCTTTAATATCTCAAAAAAAAGAAAGTGATAGCTCATATTCTAAATGTACATCTCACATTTTCCTTAAAATAGTCTGTTAACGAGGAGATAAGATTATTAGTAATGTTACACTTCCAAATTCAAAACTCCCTAATAATAATATTTTTCTAAGGTTATATGTAATGTACTTTTATTGATGGATTTCATTAAAAATCTCATCAAGTTATTTGAGGCATTACAACATATCCCAATGCTTTATATTAAATGTCTATTTTACAGTCCTTTTCTCGTCAAAAATTGTATTTGAGGTGAAGCATATGTAGCCATAATGTTACTAATAATAAGCAAGCATGCCAAACAAGAATTT

Network for GWHGAAEX016183

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14299.5	PP2	116	285	5.40E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.040
SRP064423	SRR2545915	Juvenile tuber	3.060
SRP108465	SRR5643513	five period of Gastrodia elata	4.500
	SRR5643514	five period of Gastrodia elata	4.150
	SRR5643515	five period of Gastrodia elata	6.130
	SRR5643524	five period of Gastrodia elata	4.160
	SRR5643525	five period of Gastrodia elata	7.620
	SRR5643528	five period of Gastrodia elata	7.960
	SRR5643658	five period of Gastrodia elata	3.190
	SRR5643659	five period of Gastrodia elata	8.540
	SRR5643660	five period of Gastrodia elata	7.520
	SRR5643661	five period of Gastrodia elata	8.580
	SRR5643662	five period of Gastrodia elata	5.510
	SRR5643663	five period of Gastrodia elata	6.940
	SRR5643664	five period of Gastrodia elata	6.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.440
SRP279888	Gastro	Gastrodia elata tuber	7.98
	Juven	Juvenile tuber	5.13
	Mother_Gastro	Mother tuber of Gastrodia elata	32.83
	Mother_Juven	Mother tuber of Juvenile	14.98