Gene detail

Detail information of GWHGAAEX016185/evm.TU.scaffold_73.106

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|284041446\|ref\|YP_003391376.1\|	3.00E-69	family 2 glycosyl transferase [Spirosoma linguale DSM 74]
nr	gi\|743764044\|ref\|XP_010912224.1\|	0	PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9LZR3\|CSLA9_ARATH	0	Glucomannan 4-beta-mannosyltransferase 9
trEMBL	tr\|W1PYY4\|W1PYY4_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN13216.1}
TAIR	AT5G03760	0	Nucleotide-diphospho-sugar transferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	2402777	2411086	-

Transcript Sequence
>GWHTAAEX016185 AGTAAATCCAACATTCTCTTCTTTTCATCAATCGACGCAAGCAATCCAATCCACATTTGCTCCTAAAGATTGCATTTGTGTCATTTTAAAATCTGATATGGAAAGAGGAGGCATTGTCGGGCAAATTCGGATGGGATTGATGTGGGATCAGGTAAAGGCGCCAGTGATCTTGCCGCTGCTTCGAGCGGCCGTGCTTCTCTGCTTGGTAATGTCAGCGATGCTTCTCATAGAGAAGATCTACATGACCGCCATCATTCTCCTCGTCAAAATATTAGGAAGAAGGCGCCCTGGTAAATCGTTCAGAGGAGAGGCATTCAGGGAGGATTTAGAGCAAGGCAACGCTGCCTTCCCTATGATTCTCGTTCAAATCCCAATGTATAATGAGAAAGAGGTTTATAAGCTCTCGATCGGAGCCGCATGCGGTCTCTCATGGCCTTCGGATCGAATTATTGTTCAGGTGCTTGACGATTCTACGGATTTAGTCATAAAGGAGATGGTGGAGAAGGAGTGCGGGCGATGGGCAAGCAAAGGGTCAAACATCAGGTACGAGAGAAGGGGCGATCGGAAGGGCTACAAGGCCGGAGCGCTCGGGGAAGGCATGAAGCATGGCTACATCAAAGACTGCGAATTCGTTGCCATCTTCGACGCAGACTTCCAGCCCGAGCCTGACTTTCTCCTCCGTGCAATGCCGTTTCTCCTCCGCAACCCTCAGATTGCTCTCGTTCAGGCGCGATGGACTTTTGTGAATGCGAGCGAGTGTTTGATGACGCGGATGCAGAAGATGTCCCTGGATTACCATTTTACCGTCGAGCAGGAAGTTGGTTCCTACATGCATTCTTTCTTCGGCTTCAATGGGACTGCTGGTGTGTGGCGTATATCAGCTCTTAATGAAGCAGGAGGTTGGAAGGACCGAACTACAGTTGAGGATATGGATTTGGCTGTTCGAGCAAGCCTCAAAGGATGGAAATTTGCTTATGTCTCAGATATAAAGGTAAAGAATGAATTGCCAAGCACTTTCAAGGCATACCGTTATCAACAGCATAGGTGGTCTTGCGGTCCGGCAAATCTGTTTAGGAAAATGTTCTTGGAGATTGTGAAAAACGAGAGAGTATCTCTGTTGAAGAAAGTGCATGTGATCTACAATTTCTTTTTTGTGCGGAAGATTATTGCACACATTGTAACTTTTGTGTTCTATTCTGTGGTGATTCCTGCAGCTGTTTTAGTACCTGAAGTTCATATCCCCAGATGGGGTTCGGTCTATATTCCCTCCATCATCACCATTCTTAATGCCATTGGAACTCCAAGGTCTCTTCATTTACTGATATTTTGGATTCTCTTTGAGAATGTCATGTCTTTGCATAGAACAAAGGCTACCTTCATAGGCCTTCTGGAGGCAAGAAGAGTTGATGAATGGATAGTCACAGAAAAATTAGGAGATGCCTTTCAGACCAAAGTTGTACCCAAATCAGCTAGATTTTTACATTTCAGAATTTTTGATAGGCTACATTTGTTGGAATTGGGGATGGGTACCTTCATCTTCTTCTGTGGCTGCTATAATTTGGTTTTTGAGAAGAACTATTACTCTCTATACCTTTTTCTTCAAGCTTCTGCTTACTTTGTTGTTGGTTTTGGATATGTGGGCAGTTTTGTTTCATGA

Network for GWHGAAEX016185

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13632.5	Glyco_trans_2_3	179	375	1.10E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.130
SRP064423	SRR2545915	Juvenile tuber	1.650
SRP108465	SRR5643513	five period of Gastrodia elata	1.170
	SRR5643514	five period of Gastrodia elata	1.060
	SRR5643515	five period of Gastrodia elata	0.270
	SRR5643524	five period of Gastrodia elata	0.690
	SRR5643525	five period of Gastrodia elata	1.600
	SRR5643528	five period of Gastrodia elata	0.890
	SRR5643658	five period of Gastrodia elata	1.260
	SRR5643659	five period of Gastrodia elata	0.880
	SRR5643660	five period of Gastrodia elata	0.830
	SRR5643661	five period of Gastrodia elata	0.220
	SRR5643662	five period of Gastrodia elata	0.300
	SRR5643663	five period of Gastrodia elata	0.630
	SRR5643664	five period of Gastrodia elata	1.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.560
SRP279888	Gastro	Gastrodia elata tuber	0.86
	Juven	Juvenile tuber	0.28
	Mother_Gastro	Mother tuber of Gastrodia elata	24.85
	Mother_Juven	Mother tuber of Juvenile	10.65