Detail information of GWHGAAEX016186/evm.TU.scaffold_73.107
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2202 | 1.00E-125 | U2 snRNP splicing factor, small subunit, and related proteins |
| nr | gi|720072051|ref|XP_010278242.1| | 9.41E-157 | PREDICTED: splicing factor U2af small subunit B-like [Nelumbo nucifera] |
| Swissprot | tr|Q9FMY5|U2AFB_ARATH | 3.00E-126 | Splicing factor U2af small subunit B |
| trEMBL | tr|D5ABW9|D5ABW9_PICSI | 5.00E-150 | Putative uncharacterized protein {ECO:0000313|EMBL:ADE77038.1} |
| TAIR | AT5G42820 | 1.00E-125 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 2415143 | 2429301 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016186
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 14 | 37 | 5.40E-07 |
| PF00076.21 | RRM_1 | 83 | 139 | 2.00E-06 |
| PF00642.23 | zf-CCCH | 150 | 173 | 7.70E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12836 | U2AF1 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0089701 | Cellular Component | U2AF |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.570 |
| SRR2545915 | Juvenile tuber | 44.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.380 |
| SRR5643514 | five period of Gastrodia elata | 34.260 | |
| SRR5643515 | five period of Gastrodia elata | 35.710 | |
| SRR5643524 | five period of Gastrodia elata | 32.980 | |
| SRR5643525 | five period of Gastrodia elata | 45.960 | |
| SRR5643528 | five period of Gastrodia elata | 31.540 | |
| SRR5643658 | five period of Gastrodia elata | 39.690 | |
| SRR5643659 | five period of Gastrodia elata | 49.200 | |
| SRR5643660 | five period of Gastrodia elata | 57.810 | |
| SRR5643661 | five period of Gastrodia elata | 51.480 | |
| SRR5643662 | five period of Gastrodia elata | 62.100 | |
| SRR5643663 | five period of Gastrodia elata | 63.800 | |
| SRR5643664 | five period of Gastrodia elata | 62.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 49.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 47.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 64.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 73.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 73.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 57.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 64.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.60 |
| Juven | Juvenile tuber | 78.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 46.29 | |
| Mother_Juven | Mother tuber of Juvenile | 69.54 |