Detail information of GWHGAAEX016193/evm.TU.scaffold_73.114
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337285673|ref|YP_004625146.1| | 4.00E-84 | pantoate/beta-alanine ligase [Thermodesulfatator indicus DSM 15286] |
| KOG | KOG3042 | 2.00E-138 | Panthothenate synthetase |
| nr | gi|695041524|ref|XP_009408370.1| | 9.57E-152 | PREDICTED: pantoate--beta-alanine ligase isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FKB3|PANC_ARATH | 6.00E-139 | Pantoate--beta-alanine ligase |
| trEMBL | tr|M0TE48|M0TE48_MUSAM | 2.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P02580_001} |
| TAIR | AT5G48840 | 2.00E-138 | homolog of bacterial PANC |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000076 | 2572913 | 2613124 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016193
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02569.14 | Pantoate_ligase | 6 | 298 | 4.40E-94 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01918 | panC | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| beta-Alanine metabolism | map00410 | ||
| Pantothenate and CoA biosynthesis | map00770 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0015940 | Biological Process | pantothenate biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004592 | Molecular Function | pantoate-beta-alanine ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.070 |
| SRR2545915 | Juvenile tuber | 19.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.630 |
| SRR5643514 | five period of Gastrodia elata | 38.710 | |
| SRR5643515 | five period of Gastrodia elata | 30.540 | |
| SRR5643524 | five period of Gastrodia elata | 38.570 | |
| SRR5643525 | five period of Gastrodia elata | 32.110 | |
| SRR5643528 | five period of Gastrodia elata | 30.440 | |
| SRR5643658 | five period of Gastrodia elata | 24.020 | |
| SRR5643659 | five period of Gastrodia elata | 12.740 | |
| SRR5643660 | five period of Gastrodia elata | 11.900 | |
| SRR5643661 | five period of Gastrodia elata | 9.740 | |
| SRR5643662 | five period of Gastrodia elata | 5.840 | |
| SRR5643663 | five period of Gastrodia elata | 10.360 | |
| SRR5643664 | five period of Gastrodia elata | 5.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.72 |
| Juven | Juvenile tuber | 12.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.96 | |
| Mother_Juven | Mother tuber of Juvenile | 13.50 |