Gene detail

Detail information of GWHGAAEX016195/evm.TU.scaffold_73.116

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262193487\|ref\|YP_003264696.1\|	2.00E-38	MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOG	KOG1347	0	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|672162179\|ref\|XP_008800923.1\|	0	PREDICTED: MATE efflux family protein 5-like [Phoenix dactylifera]
Swissprot	tr\|Q8RWF5\|MATE9_ARATH	5.00E-162	MATE efflux family protein 9
trEMBL	tr\|M0SIS4\|M0SIS4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P29080_001}
TAIR	AT1G71140	0	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	2677192	2684597	+

Transcript Sequence
>GWHTAAEX016195 AGAAAAGAAGGGCGTATAAATAAAAAGGGGACAGAAGGAAGGGCGTTCAATAATGGAGGAAGGGCTTCTGGAGAGGAAGGAGGAGGGTTCCGTGAAGGGATGCCATGGTGGTTTTGCCGCGGAGGCGAGGAGGCTGGGTTACCTCGCAGGGCCGATGGTCGGGGTGACTCTATCTCAGTACCTTGTTCAGGTCACTTCCTCCATGATGGTCGGCCATCTCGGTGAGTTGGAGCTCTCCAGCGCCGCTATTGCAACTTCTCTCTCTGGCGTCACTGGATTCAGTCTCCTCCAAGGAATGGCTAGCGGCTTGGACACTTTATGCGGCCAAGCGTATGGGGCACAACAGTACAAGAAAGTGGGAATCCATACATACAGAGCCATCCTCTCGCTCATACTTGTCAGCATTCCTATTTCTCTCGTTTGGGTCTCTATGGGGAATCTTCTGACTCTCATAGGACAGGACCCCACAATATCCCAAGAGGCTGGCAGATATGCAGCTTGGATGATCCCCGGCCTCTTTGCCTATGGCATCACTCAGCCTCTCATGAAGTTTCTCCAGTCTCAAAGCTTAATCTTTCCTATGCTTCTGAGCTCATCAGCAACCCTCTGTATCCACATTCCCTTGTGCTGGGCCATGGTATTTAAATTTGGACTCGGCAATGTCGGGGCGGCCCTCTCTATAAGCATTTCTTATTGGATCAATGTGCTGATTCTTGTACTGTACATCAAATACTCCGATTCTTGCAAGGCAACTCGTGCACCGCTCTCGCTGGAGGCATTCAAGGGCATCAATGAGTTCTTGAAGCTAGCGGTTCCTTCGGCGGTAATGCTATGCCTCGAATGGTGGTCTTTCGAGATGCTCGTGTTACTCTCAGGACTGTTACCGAATCCAAAGCTTGAAACATCTGTGCTTTCTATTTGTCTCACAAGCATTTCATTGTTCTACACCATACCATTTGGCCTTGGTTGCGCTGCAAGCACTCGCGTGTCAAATGAACTAGGAGCCGGGAACCCTGAACGAGCGCATCTGGCTGTTCGCATGGCGATATCGGTGACAATCTCGGAGGCATTGGTGGTGAGCGCGACGCTCTTTGGCCTTCGCAGGGTTTTTGGTTATGCCTATAGCAACGAAGAGGAGGTTGTGAATTATGTTAGAGAGATGGCTCCTCTAGTCTCCCTCTCTGTTATCGTTGATGGCTGCCTTGGAGTGTTCTCAGGGATCGCTCGTGGATGCGGGTGGCAGCACATCGGAGCTTATGTGAATCTTGGAGCATTCTACCTTGTCGGAATCCCAATTGCGGTTGTGCTAGGCTTTTTCTTTCACATTGGAGGCAAGGGCCTATGGATTGGCATACTATCAGGTGCCTCAGTTCAAAGCGTCCTTCTCGGAATGATAACCACTTTTACTAATTGGCAACAACAGGCAGTTATTGCCAGGAAGAGAGTAATAGATGAGAAATTCCCGTTAGAAAATGATCTGAAATGAGGCCACGTGTCACTCTTTTCTTTGTTGCATTGGGTGCCATCTCTCACTCACAAATTTTCAGCTCAAATCAAAGCCAACTGAGTAGTGGCATGAGCAAAAAGCTCCTGCACTTTGGAATATTTTCTAATTGCAGGTTTAATTTTGATGTGTGTACAAGTACTTTCAATGTTTAATTAGAAATTATTAAATTTTAGCGTGATGTCTTCAGTATATGATGCATGAAACTTCAAATACGTCCTCTCTCTCTCTCTCTCTCATTTCTAATAATGAGCAGCCAGACAAACTACAAAGAACTCAACTTTTTGGCTTTAAAAATATAGAGTAATAATACACGCGGTCATAAAACATTATGAACACTCCATATTGGCAAATACAGGCAGTCATGCAATAAACACAAATGAATCATCCATAGAGCTATGAAGCTTTCAACAGATTCGCACTGCACAGCAAGTATGGCCTGATCGATGGAAGAAGTGTTGGTTGAAGATGGCCTGAGGAGTGCGCCGCCAGCGATGCGACGGGGCGGCGAAATACAGGAGGGCGAGTGGATGGCGGCCATCGCTGTACCCATGGTTGCGGTGACACTGTCTCAGTACCTGCTCCAGGCAGTATCCGTAGCCATGGTCGGGCGGCTTGGAGAGCTCCCCCTCTCCGGTTCTGCTGTGGCCGCATCCCTCACTACCATCACTGGCACCAGCCTTCATGTAAGTCCATCCATTCTCTTTTCAATTCTAATATTCTCAAGTGACAATGCGCTTTCACTATATATGGAGGCTAGGGATTCTCAAGCATCAATTCTCTCAATACTTTTGAAGTGTTAAACGGGATTTCAATAACAATAAAGCATTGATGGTGAATAGTGGTATAGCCTAGTGATTAAGATTCGAATTGTTATTCTATATCATAAGTTAAGGCATATTTACTTATTATCTGAAACTTATATTATTTCAAACAAATAAAACATTGATGTAAAAAACTAAGCAAAAGACATAATTTAACACAGCAGCAACGAATTTCTTAATCTTCCACCTTCTATGTCCTCTCTCTCTATTGTAAGGGACGAAAAAAATGTGCTTTTATCAAATTTTTTTTTCGATCCCCAATAAATCCATTCATTATATAAAAATATACTTTTTATTGGAGAACTATTAAAAAAAGAATCCCCTAATTAGGGCAATAGAATTAAAAAGCATATTGTTACTAAATATTTCAGCACACTCCTCAAGTTGGTGCATATATATAGTGCTCATACCCAATTTATAAAGTAACTTGAAGAATGATTAATTTTAGATAACTTTAATGAAGATGTTAGTTGGTTGATCTTTGATTTAAATTATTAGAAATTCTATAATCATTGTATCCAACTTTTCTTTGATGAAGAACTTATCCATTTTGACATGTTTTGGTTAGTTATGTTGAACATGATTGCAAGCAATAACACATGTTGCTTTGTTATTGTAGAATTGAATTCCCTAATAAATACCTCC

Network for GWHGAAEX016195

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	34	193	1.10E-32
PF01554.17	MatE	255	417	8.20E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0015297	Molecular Function	antiporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.720
SRP064423	SRR2545915	Juvenile tuber	3.870
SRP108465	SRR5643513	five period of Gastrodia elata	20.290
	SRR5643514	five period of Gastrodia elata	11.510
	SRR5643515	five period of Gastrodia elata	16.740
	SRR5643524	five period of Gastrodia elata	12.920
	SRR5643525	five period of Gastrodia elata	25.510
	SRR5643528	five period of Gastrodia elata	38.860
	SRR5643658	five period of Gastrodia elata	24.340
	SRR5643659	five period of Gastrodia elata	7.640
	SRR5643660	five period of Gastrodia elata	4.040
	SRR5643661	five period of Gastrodia elata	5.870
	SRR5643662	five period of Gastrodia elata	8.430
	SRR5643663	five period of Gastrodia elata	4.310
	SRR5643664	five period of Gastrodia elata	4.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.790
SRP279888	Gastro	Gastrodia elata tuber	6.83
	Juven	Juvenile tuber	61.41
	Mother_Gastro	Mother tuber of Gastrodia elata	26.43
	Mother_Juven	Mother tuber of Juvenile	19.99