Gene detail

Detail information of GWHGAAEX016199/evm.TU.scaffold_73.122

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262193487\|ref\|YP_003264696.1\|	5.00E-38	MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOG	KOG1347	0	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|672162179\|ref\|XP_008800923.1\|	0	PREDICTED: MATE efflux family protein 5-like [Phoenix dactylifera]
Swissprot	tr\|Q9SIA4\|MATE5_ARATH	2.00E-146	MATE efflux family protein 5
trEMBL	tr\|M4CJ03\|M4CJ03_BRARP	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
trEMBL	tr\|M4CJ03\|M4CJ03_BRARP	1.00E-132	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR	AT1G71140	0	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000076	2764203	2814826	+

Transcript Sequence
>GWHTAAEX016199 ATGGAGGACGGACTCTTGGTGAGGAAGGAGGAGAGTTCAGTGTGGGGATGCTACGGCGATCTGACCTCGGAGGCAAGGAGGCTGGGCTACCTAGCCGGGCCTATGGTGGGGGTGACTCTATCGCAGTACCTTGTACAGGTCGTCTCCTCCATGATGGTCGGCCATCTCGGCGAGCTAGAACTCTCCAGCGCCGCCATTGCTACTTCTCTAGCCGGTGTCACTGGTTTCAGTCTCCTCCTAGGAATGGCTAGCGGCTTGGACACTCTTTGCGGCCAAGCATATGGAGCGAAGCAGTACAAGAAGCTGGGAATCCACACATACAGAGCCATCCTCTCTCTCACACTAATCTGCCTCCCTATTTCGCTGATTTGGGTCTCCATGGGAAAGCTTCTCTCGCTGGTAGGACAGGACCCTCTAATATCCCAAGAGGCGGGCAGGTATGCAGTATGGATGATCCCTGGCCTCTTTGCCTTTGCCACTGCTCAGCCTCTGATGAAGTTTCTTCAGTCCCAAAGCTTAATCCTTCCTATGCTTCTGAGCTCACTTGCCACCCTTTGCATTCACATTCCCCTGTGCTGGGCCATGGTTTTCAATACTAGATTGGGCAATATTGGGGCGGCGCTTTCTATAAGCATTTCCTATTGGATCAATGTGCTTATGATTGTGCTCTACATTAAATACTCGAATTCTTGCAAAGAAACTCGTGCACCGCTCTCAATGGAGGCATTCAAGGGCATTAATGAGTTCTTGAGGCTAGCAATTCCCTCTGCGGTAATGATATGCCTTGAATGGTGGTCATTCGAACTGTTAGTTTTACTCTCAGGCCTCTTGCCAAATCCGAGGCTCGAAACCTCAGTCCTTTCGATATGCCTTACAAGCATTGCACTGCTGTACACCATACCATATGGCCTTGGCTGTGCTGTAAGCACACGCGTGTCGAACGAACTTGGAGCCGGGAATCCAGAAAGAGCTCATCTGGCCGTGCGTGTGGCTATCTCGACCATCATTGTGGTGGTGTTGGTGGTGAGTTTAATTCTCCTCGGCCTCCGTCGGGTTGTCGGTTATGCTTACAGCAACGAGGAGGAGGTTGTGAGCTATGTTCAGGAGATGGTCCCTCTTGTGTCCATCTCAGTCATCATGGATGGCTGCCAAGGAGTGCTGTCCGGAGTTGCCCGCGGCTGCGGTTGGCAGCACATTGGAGCCTACGTGAATCTTGGAGCATTCTACCTGGTCGGAATCCCGACCGCGGTAGTGCTAGCCTTTTTCTTTCACATTGGAGGCAAGGGGCTGTGGATCGGCATTTTATCCGGTGCTATGATTCAGAGCTTTCTTCTGGGATTGATAACTATTTTTACTAAATGGCAGCAGCAGGTGCTCTTGCTGATTTTTCAATTATGTGTATTAGGGGGGGTAGCAGCTGGAAAAATGGAGGACGGGCTCTTGGTGAGGAAGGAGGAGAGTTCAGTGAGCGGAAGCTACGGTTATCTGACCTCGGAGGCGAGGAGGCTGGGCTACCTAGCAGGGCCGATGGTGGGGGTGACTCTATCGCAGTACCTTATACAGGTCGTATCCTCCATGATGGTCGGCCATCTCGGCGAGCTAGAACTCTCCAGCGCCGCCATTGCTACTTCTCTAGCCGGTGTCACTGGCTTCAGTCTCCTCCAAGGAATGTCTGGTGGCTTGGACACCCTTTGCGGTCAAGCGTATGGAGCACAACAATACAAGAAAGTAGCAATTCACACATATAGAGCCATCCTCTCACTTGTATTAGTCAGCCTACCCATCTCCCTCATTTGGGTCTCGATGGGGAACTTTCTTTCTTTCATAGGACAGGATCCCTTGATATCTCAAGAAGCAGGCAGATACGTAACATGGATGATCCCAGGCCTCTTTGCCTATGCAACTACTCAGCCTGTCATGAAGTTTCTTCAATCCCAAAGTTTAATTCTTCCTATGCTTCTAAGCTCATTTGCAACCCTTTGCATCCACATTCCCCTGTGCTGGGGCATGGTTTTCAAAACTAGACTGGGCAACATTGGAGCTGCACTTTCTATAAGCATGTCTTATTGGATCAATTTGCTTATTCTTGTACTCTACATTATAGGCTCAGATACATGTAAAGCAACTCGTGCGCTGCCCTCTATGGAAGCATTCAGGGGTATCAATGAGTTCTTAAGACTAGCAATTCCCTCTGCGATAATGACATGCCTTGAATGGTGGTCATTCGAGATGTTAGTGTTACTCTCAGGCCTCCTGCCAAATCCAAAGCTTGAAACTTCGGTTCTTTCAATATGTCTTACAAGCATTGCGCTGCTCTACAACATATCGCATGGCATTGGCTGTGCTGCAAGCACACGCATAGCCAACGAGCTAGGAGCCGGGAATCCAGAAGGAGCTCGCCGGGCCTTTCGCATGGCCATATCGATCTCCACTTTGGAGGCAGTGGTGCTGAGCGCGACGCTCCTCGGCCTCCGTCGAGTCGTCGGTTACGCTTACAGCAAAGAGGAGGAGGTCGTGGCCTATGTGAGACAGATGGTCCCTCTCATTTGCATCTCAGTTAATTTGGGAGGCTGCAATGGAGTTCTGTGCGGAGTTGCTCGGGGATGCGGATGGCAGCGTTTAGGAGCCTACGTGAATCTCGGAGCATACTATCTCTTCGGAATTCCGGCGGCGGTCGTTTTAGGGTTTAACCTTCACGTTGGAGGCAAGGGCCTGTGGATCGGCATTTTATGCGGTTCTGTTCTTCAGAACTCTGTTCTTGGATTCATAGCTGTTTTCACTAACTGGCAGCATCAGGCTAATCTGGCACAGAAGAGAGTGTTTGAAGCAAGATTGTCGTTCGATTATGATGTGAAATAA

Network for GWHGAAEX016199

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	34	193	2.30E-32
PF01554.17	MatE	255	417	3.40E-28
PF01554.17	MatE	509	668	2.50E-31
PF01554.17	MatE	730	892	1.50E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0015297	Molecular Function	antiporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	99.580
SRP064423	SRR2545915	Juvenile tuber	95.110
SRP108465	SRR5643513	five period of Gastrodia elata	70.690
	SRR5643514	five period of Gastrodia elata	55.420
	SRR5643515	five period of Gastrodia elata	68.850
	SRR5643524	five period of Gastrodia elata	59.050
	SRR5643525	five period of Gastrodia elata	2.550
	SRR5643528	five period of Gastrodia elata	3.910
	SRR5643658	five period of Gastrodia elata	3.200
	SRR5643659	five period of Gastrodia elata	75.430
	SRR5643660	five period of Gastrodia elata	89.510
	SRR5643661	five period of Gastrodia elata	65.550
	SRR5643662	five period of Gastrodia elata	28.760
	SRR5643663	five period of Gastrodia elata	25.900
	SRR5643664	five period of Gastrodia elata	42.520
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	145.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	94.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	206.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	194.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	238.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	152.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	176.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	76.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	108.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	63.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	63.050
SRP279888	Gastro	Gastrodia elata tuber	52.13
	Juven	Juvenile tuber	45.32
	Mother_Gastro	Mother tuber of Gastrodia elata	49.07
	Mother_Juven	Mother tuber of Juvenile	34.74